1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attcagactgcttttataccttgctctagcatataaatgggcataatgctaccagagtgcaccatgataatcttacaatattgatcattgttttctacagCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACT
species | Oryza sativa |
transcript | LOC_Os06g20340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATG CGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGEST: gi|86827961|gb|CI274883.1|CI274883
genomic: GTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGgtacctttat ... ttttctacagCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTG
EST: GGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATG CGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGEST: gi|29675978|gb|CB672253.1|CB672253
genomic: GGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGgtacctttat ... ttttctacagCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTG
EST: GTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATG CGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGEST: gi|218491347|gb|FG955034.1|FG955034
genomic: GTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGgtacctttat ... ttttctacagCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTG
EST: GTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATG CGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGEST: gi|87020910|gb|CI269627.1|CI269627
genomic: GTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGgtacctttat ... ttttctacagCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTG
EST: AAGAAAGAAGACCACAAGTGCAATTGGCTGATG CGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGEST: gi|33808575|gb|CF330173.1|CF330173
genomic: AAGAAAGAAGACCACAAGTGCAATTGGCTGATGgtacctttat ... ttttctacagCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTG
EST: GTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATG CGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTG
genomic: GTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGgtacctttat ... ttttctacagCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTG
atgctaccagagtgcaccatgataatcttacaatattgatcattgttttctacagCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACT
tattgat putative branch site (score: 12)
ttgttttct putative PPT
ataatcttacaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcagactgcttttataccttgctctagcatataaatgggcataatgctaccagagtgcaccatgataatcttacaatattgatcattgttttctacagCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - -ctgcttt
- - - - - - - - - -cttgctc
- - - - - - - - - - - - - - - - - - - - - - - tgctacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcacc