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...gtctgtttatagaagaaaataatattgctactctctgataaatttcaataactattagtcttttaactgataaatgataagtactatttgcaatatgtagAGCGATGGGAGATGTTTCTGATCGCATTGGTCGCCCTACGGACAATGGACAG
species | Oryza sativa |
transcript | LOC_Os05g51480.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATTCTGTGTTCTGCAGTGGGATGGAGAAAAATCGGAGCTTCTCACTAG AGCGATGGGAGATGTTTCTGATCGCATTGGTCGCCCTACGGACAATGGACAEST: gi|88364944|gb|CI616363.1|CI616363
genomic: AAATTCTGTGTTCTGCAGTGGGATGGAGAAAAATCGGAGCTTCTCACTAGgtttggtcac ... caatatgtagAGCGATGGGAGATGTTTCTGATCGCATTGGTCGCCCTACGGACAATGGACA
EST: AAATTCTGTGTTCTGCAGTGGGATGGAGAAAAATCGGAGCTTCTCACTAG AGCGATGGGAGATGTTTCTGATCGCATTGGTCGCCCTACGGACAATGGACAEST: gi|88299811|gb|CI577313.1|CI577313
genomic: AAATTCTGTGTTCTGCAGTGGGATGGAGAAAAATCGGAGCTTCTCACTAGgtttggtcac ... caatatgtagAGCGATGGGAGATGTTTCTGATCGCATTGGTCGCCCTACGGACAATGGACA
EST: AAATTCTGTGTTCTGCAGTGGGATGGAGAAAAATCGGAGCTTCTCACTAG AGCGATGGGAGATGTTTCTGATCGCATTGGTCGCCCTACGGACAATGGACAEST: gi|117232962|gb|CT842296.1|CT842296
genomic: AAATTCTGTGTTCTGCAGTGGGATGGAGAAAAATCGGAGCTTCTCACTAGgtttggtcac ... caatatgtagAGCGATGGGAGATGTTTCTGATCGCATTGGTCGCCCTACGGACAATGGACA
EST: AAATTCTGTGTTCTGCAGTGGGATGGAGAAAAATCGGAGCTTCTCACTAG AGCGATGGGAGATGTTTCTGATCGCATTGGTCGCCCTACGGACAATGGACAEST: gi|88431005|gb|CI571995.1|CI571995
genomic: AAATTCTGTGTTCTGCAGTGGGATGGAGAAAAATCGGAGCTTCTCACTAGgtttggtcac ... caatatgtagAGCGATGGGAGATGTTTCTGATCGCATTGGTCGCCCTACGGACAATGGACA
EST: AAATTCTGTGTTCTGCAGTGGGATGGAGAAAAATCGGAGCTTCTCACTAG AGCGATGGGAGA
genomic: AAATTCTGTGTTCTGCAGTGGGATGGAGAAAAATCGGAGCTTCTCACTAGgtttggtcac ... caatatgtagAGCGATGGGAGA
caataactattagtcttttaactgataaatgataagtactatttgcaatatgtagAGCGATGGGAGATGTTTCTGATCGCATTGGTCGCCCTACGGACAATGGACAG
ttttaactgataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtttatagaagaaaataatattgctactctctgataaatttcaataactattagtcttttaactgataaatgataagtactatttgcaatatgtagAGCGATGGGAGATGTTTCTGATCGCATTGGTCGCCCTACGGACAATGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
-tctgttt
- - - - - -gaagaaa
- - - - - - - - - - - - -tgctact
- - - - - - - - - - - - - - - - - - - - - - -caataac