1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctcctgcattcctttatatatttttcttgtttatatggcctatgtgctaactacctcctatgcggcaaaatactcaagcactttctcctcttgtgcacagCGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGAAAAACTGAGCAAAGATGAAGTGCAGAAAATGCCATGGGAAATTTTGGAG
species | Oryza sativa |
transcript | LOC_Os04g58880.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAG CGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGAEST: gi|29630823|gb|CB635832.1|CB635832
genomic: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAGgtaaaaggaa ... ttgtgcacagCGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGA
EST: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAG CGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGAEST: gi|86821957|gb|CI309340.1|CI309340
genomic: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAGgtaaaaggaa ... ttgtgcacagCGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGA
EST: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAG CGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGAEST: gi|58663378|gb|CK052064.1|CK052064
genomic: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAGgtaaaaggaa ... ttgtgcacagCGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGA
EST: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAG CGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGAEST: gi|66922614|gb|CX119142.1|CX119142
genomic: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAGgtaaaaggaa ... ttgtgcacagCGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGA
EST: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAG CGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGAEST: gi|33676024|gb|CF304263.1|CF304263
genomic: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAGgtaaaaggaa ... ttgtgcacagCGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGA
EST: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAG CGAAGCCCGTGCCTCTGCTTT
genomic: CAACAGTTGGTACAAGCGGGATGCCAACAACAATGCTCAGAAATATACAGgtaaaaggaa ... ttgtgcacagCGAAGCCCGTGCCTCTGCTTT
gctaactacctcctatgcggcaaaatactcaagcactttctcctcttgtgcacagCGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGAAAAACTGAGCAAAGATGAAGTGCAGAAAATGCCATGGGAAATTTTGGAG
tgctaac putative branch site (score: 27)
cactttctcctcttgt putative PPT
aaaatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctgcattcctttatatatttttcttgtttatatggcctatgtgctaactacctcctatgcggcaaaatactcaagcactttctcctcttgtgcacagCGAAGCCCGTGCCTCTGCTTTAGAGTCAAGTTTGAAGAGCTTGGGTGTTGAAAAACTGAGCAAAGATGAAGTGCAGAAAATGCCATGGGAAATTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - tgcattc
- - - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcggca