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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatactcccggtaaatgcgcgtgaaaattttccattttgattcatcaattctgaagaacagttttattctgaacatcttcaaatcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCGTTTGCTGAATTGTACGGAGTCCTGGACTGCGCCTAGTTTTCCCAAAGCA

Basic information

species Oryza sativa
transcript LOC_Os04g51190.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29664621|gb|CB660896.1|CB660896
EST:     TCCAATGGCAACCTCTGACTTCTGGACCACCAGCTCACGATCACACAACG                         ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: gi|88957397|gb|CI095338.1|CI095338
EST:     TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG                         ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: gi|58668873|gb|CK057559.1|CK057559
EST:     TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG                         ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: gi|88961156|gb|CI096560.1|CI096560
EST:     TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG                         ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: gi|86493048|gb|CI135681.1|CI135681
EST:     TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG                         ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: gi|86505027|gb|CI147660.1|CI147660
EST:     TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG                         ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: gi|88507970|gb|CI435476.1|CI435476
EST:     TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG                         ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: gi|88905842|gb|CI002180.1|CI002180
EST:     TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG                         ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattcatcaattctgaagaacagttttattctgaacatcttcaaatcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCGTTTGCTGAATTGTACGGAGTCCTGGACTGCGCCTAGTTTTCCCAAAGCA
 ttttgat  putative branch site (score: 4)
                      agttttatt  TA-rich tract