1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaaatgaaagttgtttttcatttcttttagcctgtttggtcactctctatctggacaagaaaatatgctcacatgatcatcacaaatgttgttcttacagGACAACGTCCGAAACCAACTGATCCAATTTGAACTGCTGCTGACCACGGCTACATTCGTGGTGGCCATCTTCGGAGTTGTCTCGGGAGTTTTTGGCATGA
species | Oryza sativa |
transcript | LOC_Os04g42280.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tctatctggacaagaaaatatgctcacatgatcatcacaaatgttgttcttacagGACAACGTCCGAAACCAACTGATCCAATTTGAACTGCTGCTGACCACGGCTACATTCGTGGTGGCCATCTTCGGAGTTGTCTCGGGAGTTTTTGGCATGA
tgctcac putative branch site (score: 14)
ttgttctt putative PPT
aagaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatgaaagttgtttttcatttcttttagcctgtttggtcactctctatctggacaagaaaatatgctcacatgatcatcacaaatgttgttcttacagGACAACGTCCGAAACCAACTGATCCAATTTGAACTGCTGCTGACCACGGCTACATTCGTGGTGGCCATCTTCGGAGTTGTCTCGGGAGTTTTTGGCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-aaatgaaa
- - - - - - - -tttcatt
- - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaat