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gtaagctgcacctcctttatgaggcagacaatgctttataaaattgttcctgcccttatcgattgtttttgttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA
species | Oryza sativa |
transcript | LOC_Os04g32330.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATG GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGEST: gi|58676164|gb|CK064851.1|CK064851
genomic: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATGgtaagctgca ... gttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATG
EST: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATG GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGEST: gi|58670038|gb|CK058724.1|CK058724
genomic: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATGgtaagctgca ... gttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATG
EST: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATG GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGEST: gi|88356597|gb|CI626212.1|CI626212
genomic: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATGgtaagctgca ... gttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATG
EST: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATG GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGEST: gi|218479259|gb|FG949034.1|FG949034
genomic: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATGgtaagctgca ... gttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATG
EST: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATG GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGEST: gi|58592377|gb|CF990685.1|CF990685
genomic: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATGgtaagctgca ... gttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATG
EST: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATG GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGEST: gi|218481751|gb|FG959381.1|FG959381
genomic: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATGgtaagctgca ... gttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATG
EST: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATG GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGEST: gi|58659078|gb|CK047758.1|CK047758
genomic: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATGgtaagctgca ... gttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATG
EST: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATG GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAEST: gi|58659774|gb|CK048454.1|CK048454
genomic: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATGgtaagctgca ... gttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGA
EST: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATG GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGEST: gi|58689671|gb|CK078358.1|CK078358
genomic: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATGgtaagctgca ... gttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATG
EST: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATG GAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATG
genomic: AAATGCCTCTCCGTACCAACTCTGGAGTAGGTCATTTGCATCTGACAATGgtaagctgca ... gttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATG
agacaatgctttataaaattgttcctgcccttatcgattgtttttgttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA
tttttgttc CT-rich tract
tttataaaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgcacctcctttatgaggcagacaatgctttataaaattgttcctgcccttatcgattgtttttgttcatatagGAGACCAGGTTGAAGCTGTTGTCCCTTTCATGGGTGAATCTGTAACTGATGGAACTCTTGCTAACTTCTTGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA