1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaatatgtagtttgattgcattatttcaagatggcctcttaaatgtgtttgttatttacaaatagcgatggcattttcttttctctaaaaatagctggtgctcatagtgattgctgtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATGAGGCCGAGGCCCGGAAAAAG
species | Oryza sativa |
transcript | LOC_Os03g58480.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATEST: gi|218492089|gb|FG945536.1|FG945536
genomic: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAEST: gi|58686125|gb|CK074812.1|CK074812
genomic: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGA
EST: CTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCTACACAAAATGAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATEST: gi|58597056|gb|CK007584.1|CK007584
genomic: CTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATEST: gi|58657562|gb|CK046242.1|CK046242
genomic: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAEST: gi|29687299|gb|CB683574.1|CB683574
genomic: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACA
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATEST: gi|218500899|gb|FG952816.1|FG952816
genomic: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATEST: gi|29628405|gb|CB633416.1|CB633416
genomic: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATEST: gi|58667605|gb|CK056291.1|CK056291
genomic: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAACGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATEST: gi|27554048|gb|CA997948.1|CA997948
genomic: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATEST: gi|29659604|gb|CB655879.1|CB655879
genomic: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATEST: gi|29643448|gb|CB648455.1|CB648455
genomic: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATEST: gi|38481034|gb|CF965123.1|CF965123
genomic: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
EST: CCCCTTCA-TTGTATGTGC-GATCGTGC-GACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATEST: gi|33802668|gb|CF327205.1|CF327205
genomic: CCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
EST: GTGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAG TTCCACACAAAATEST: gi|2310662|gb|C26817.1|C26817
genomic: -TGTTGCCCCTTCATTTGTATGTGCTGATCGTGCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAAT
EST: GCTGACAAGAGAAAGGAG TTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
genomic: GCTGACAAGAGAAAGGAGgtgaatatgt ... gtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAAT
gcattttcttttctctaaaaatagctggtgctcatagtgattgctgtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATGAGGCCGAGGCCCGGAAAAAG
ctctaaa putative branch site (score: 65)
ctgtttcttc putative PPT
ttttctctaaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatatgtagtttgattgcattatttcaagatggcctcttaaatgtgtttgttatttacaaatagcgatggcattttcttttctctaaaaatagctggtgctcatagtgattgctgtttcttcagTTCTACACAAAATTAGAAGAGAAACACAAGGCCTTGGAAGCTGAGAAGAATGAGGCCGAGGCCCGGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA