1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttacagtttataatcagcataagcgaaacaatgaggttgctacttgctagactgaagttgcatgttgggttctgaacctagttgctgtttctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCATCATGTAAGAGATGCGAATTGCAATGTACAGTATTATTAAATTGAGTAG
species | Oryza sativa |
transcript | LOC_Os03g50440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACCCCATGATG GCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTTCEST: gi|15852518|gb|BI805314.1|BI805314
genomic: CAACCCCATGATGgtaatttcca ... ctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTG-TC
EST: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATG GCAATGAAGATCAA-GAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCAEST: gi|27545659|gb|CA763865.2|CA763865
genomic: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATGgtaatttcca ... ctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCA
EST: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATG GCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCAEST: gi|88484619|gb|CI421890.1|CI421890
genomic: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATGgtaatttcca ... ctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCA
EST: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATG GCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCAEST: gi|88242402|gb|CI242251.1|CI242251
genomic: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATGgtaatttcca ... ctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCA
EST: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATG GCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCAEST: gi|88200708|gb|CI200558.1|CI200558
genomic: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATGgtaatttcca ... ctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCA
EST: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATG GCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCAEST: gi|86845255|gb|CI340364.1|CI340364
genomic: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATGgtaatttcca ... ctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCA
EST: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATG GCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCAEST: gi|88997021|gb|CI389687.1|CI389687
genomic: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATGgtaatttcca ... ctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCA
EST: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATG GCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCAEST: gi|58592031|gb|CF990339.1|CF990339
genomic: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATGgtaatttcca ... ctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCA
EST: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATG GCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCAEST: gi|89194551|gb|CI116988.1|CI116988
genomic: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATGgtaatttcca ... ctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCA
EST: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATG GCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCAEST: gi|58691622|gb|CK080309.1|CK080309
genomic: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATGgtaatttcca ... ctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCA
EST: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATG GCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCA
genomic: AAAGGAGATGTCTGCTCCTCAGAATCGTAGGCTCCATCAACCCCATGATGgtaatttcca ... ctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCA
gctagactgaagttgcatgttgggttctgaacctagttgctgtttctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCATCATGTAAGAGATGCGAATTGCAATGTACAGTATTATTAAATTGAGTAG
ttgctgtttctttct CT-rich tract
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacagtttataatcagcataagcgaaacaatgaggttgctacttgctagactgaagttgcatgttgggttctgaacctagttgctgtttctttctgcagGCAATGAAGATCAAAGAGTAGAACAGAAAGGGCTATCGCTTAGGTGTGTCATCATGTAAGAGATGCGAATTGCAATGTACAGTATTATTAAATTGAGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - -agcataa
- - - - - - - - - - - - gaaacaa
- - - - - - - - - - - - - - - - - - -tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt