1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...catgttatttgtgatgacttctgcttataacatttatacttttttcctttgttgtacatgcacgtgacatatctaattatattctttatcttgtttacagGTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTG
species | Oryza sativa |
transcript | LOC_Os03g44900.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAGCTGAAACAAGAGATTGG-TTAACAATGTG GTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGAEST: gi|29667065|gb|CB663340.1|CB663340
genomic: AAAGCTGAAACAAGAGATTGGCTTAACAATGTGgtatgttaga ... ttgtttacagGTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGA
EST: ATCCAAAAGAGAAGGCAAAAGCTGAAACAAGAGATTGGCTTAACAATGTG GTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGAEST: gi|29645498|gb|CB650505.1|CB650505
genomic: ATCCAAAAGAGAAGGCAAAAGCTGAAACAAGAGATTGGCTTAACAATGTGgtatgttaga ... ttgtttacagGTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGA
EST: ATCCAAAAGAGAAGGCAAAAGCTGAAACAAGAGATTGGCTTAACAATGTG GTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGAEST: gi|117216962|gb|CT845285.1|CT845285
genomic: ATCCAAAAGAGAAGGCAAAAGCTGAAACAAGAGATTGGCTTAACAATGTGgtatgttaga ... ttgtttacagGTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGA
EST: ATCCAAAAGAGAAGGCAAAAGCTGAAACAAGAGATTGGCTTAACAATGTG GTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGAEST: gi|29630458|gb|CB635467.1|CB635467
genomic: ATCCAAAAGAGAAGGCAAAAGCTGAAACAAGAGATTGGCTTAACAATGTGgtatgttaga ... ttgtttacagGTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGA
EST: ATCCAAAAGAGAAGGCAAAAGCTGAAACAAGAGATTGGCTTAACAATGTG GTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGA
genomic: ATCCAAAAGAGAAGGCAAAAGCTGAAACAAGAGATTGGCTTAACAATGTGgtatgttaga ... ttgtttacagGTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGA
cctttgttgtacatgcacgtgacatatctaattatattctttatcttgtttacagGTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTG
atctaat putative branch site (score: 10)
ttctttatcttgttt putative PPT
atatctaattatattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgttatttgtgatgacttctgcttataacatttatacttttttcctttgttgtacatgcacgtgacatatctaattatattctttatcttgtttacagGTTAGTGATTTGGAAAACCAAATCGATAACTTCGAAGCTGAGGTTGAAGGACTTTCAATTAAGAAAGGAAAGCAAAGACCTCCTCGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
catgtta
- - - - -tgtgatg
- - - - - - - - - ttctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgca