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gtatcctttcatttgaatctgttgcttgatgatttttcatactaacacaatagcaagtcatagatgaagtggcaaaggggcaagtttcctttatacagcaacatgcgtacttatagtttctcatgctacctcatttgagtatttgatatgtatgatgtatcaaggaagttaagtccttaacgcattgttagACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGGTTGTTTTGGCTGGAGAACTTTTGAGGGAGGCTGAAAAGTTAGTTAACAT
species | Oryza sativa |
transcript | LOC_Os03g42220.1 |
intron # | 4 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AATTTTGAAGTCCCTTCATATAGACAACCCTGCTGCAAAGGTCCTTGTTG ACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGGEST: gi|29676853|gb|CB673128.1|CB673128
genomic: AATTTTGAAGTCCCTTCATATAGACAACCCTGCTGCAAAGGTCCTTGTTGgtatcctttc ... gcattgttagACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGG
EST: AATTTTGAAGTCCCTTCATATAGACAACCCTGCTGCAAAGGTCCTTGTTG ACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGGEST: gi|29657046|gb|CB653321.1|CB653321
genomic: AATTTTGAAGTCCCTTCATATAGACAACCCTGCTGCAAAGGTCCTTGTTGgtatcctttc ... gcattgttagACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGG
EST: AATTTTGAAGTCCCTTCATATAGACAACCCTGCTGCAAAGGTCCTTGTTG ACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGGEST: gi|29616345|gb|CB621357.1|CB621357
genomic: AATTTTGAAGTCCCTTCATATAGACAACCCTGCTGCAAAGGTCCTTGTTGgtatcctttc ... gcattgttagACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGG
EST: AATTTTGAAGTCCCTTCATATAGACAACCCTGCTGCAAAGGTCCTTGTTG ACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGGEST: gi|88422879|gb|CI615179.1|CI615179
genomic: AATTTTGAAGTCCCTTCATATAGACAACCCTGCTGCAAAGGTCCTTGTTGgtatcctttc ... gcattgttagACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGG
EST: AATTTTGAAGTCCCTTCATATAGACAACCCTGCTGCAAAGGTCCTTGTTG ACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGG
genomic: AATTTTGAAGTCCCTTCATATAGACAACCCTGCTGCAAAGGTCCTTGTTGgtatcctttc ... gcattgttagACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGG
gagtatttgatatgtatgatgtatcaaggaagttaagtccttaacgcattgttagACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGGTTGTTTTGGCTGGAGAACTTTTGAGGGAGGCTGAAAAGTTAGTTAACAT
gtccttaac putative branch site
tttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctttcatttgaatctgttgcttgatgatttttcatactaacacaatagcaagtcatagatgaagtggcaaaggggcaagtttcctttatacagcaacatgcgtacttatagtttctcatgctacctcatttgagtatttgatatgtatgatgtatcaaggaagttaagtccttaacgcattgttagACATCTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACCTCTGTGGTTGTTTTGGCTGGAGAACTTTTGAGGGAGGCTGAAAAGTTAGTTAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA