1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataattatttttttaaaaaaaaaagtcaacggtgtgatatattaaaaaattgaggtatatcagttaacctactcctttctgtcgattggaatgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAG
species | Oryza sativa |
transcript | LOC_Os03g09140.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGTGATCATCGTCC-TGTTGGAAATAAAACAGACCTTGTTGACAAGAG GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATEST: gi|33684734|gb|CF312973.1|CF312973
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
EST: GATGTGATCATCGTCCTTG-TGGAAATAAAACAGACCTTGTTGACAAGAG GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATEST: gi|16577976|gb|BI812071.1|BI812071
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
EST: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAG GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATEST: gi|33684735|gb|CF312974.1|CF312974
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
EST: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAG GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATEST: gi|33682508|gb|CF310747.1|CF310747
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
EST: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAG GCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
genomic: GATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGgttagtatct ... atgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCAT
aaaattgaggtatatcagttaacctactcctttctgtcgattggaatgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAG
agttaac putative branch site (score: 3)
tatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataattatttttttaaaaaaaaaagtcaacggtgtgatatattaaaaaattgaggtatatcagttaacctactcctttctgtcgattggaatgtcaacagGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA