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...gctgatgatgctttgcagagaacattgactacgaggaatgaattatggtatatgctattggttccatttaagcagatgctgattttcacacatttttcagGGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCAAGTCTGTAGCAGCTGGAATGAATGCGATGGATTTGAGACGTGGTATCTC
species | Oryza sativa |
transcript | LOC_Os03g04970.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATG GGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCAEST: gi|58662224|gb|CK050904.1|CK050904
genomic: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATGgtatggctta ... catttttcagGGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCA
EST: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATG GGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCAEST: gi|29634585|gb|CB639594.1|CB639594
genomic: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATGgtatggctta ... catttttcagGGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCA
EST: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATG GGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCAEST: gi|58669467|gb|CK058153.1|CK058153
genomic: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATGgtatggctta ... catttttcagGGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCA
EST: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATG GGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCAEST: gi|58662507|gb|CK051193.1|CK051193
genomic: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATGgtatggctta ... catttttcagGGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCA
EST: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATG GGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCAEST: gi|66914441|gb|CX101289.1|CX101289
genomic: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATGgtatggctta ... catttttcagGGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCA
EST: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATG GGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCA
genomic: AAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATGgtatggctta ... catttttcagGGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCA
tggtatatgctattggttccatttaagcagatgctgattttcacacatttttcagGGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCAAGTCTGTAGCAGCTGGAATGAATGCGATGGATTTGAGACGTGGTATCTC
tgctgat putative branch site (score: 22)
catttttc putative PPT
acattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgatgatgctttgcagagaacattgactacgaggaatgaattatggtatatgctattggttccatttaagcagatgctgattttcacacatttttcagGGACAACATGTGCTACTGTTCTTACAAAAGCTATATTCGCTGAGGGATGCAAGTCTGTAGCAGCTGGAATGAATGCGATGGATTTGAGACGTGGTATCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - -tgatgct
- - - - - - - - agagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - tgctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat