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gtatacctgccttgactatataataatcaattttgaagcaattgcagaagagcgtcacttgatttattcgaacgcaagagtgaaactatgaattgccttattgaaccggtgaaaactttgctgctctaaaattcagttgcctttgtgccgctcagGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTAC
species | Oryza sativa |
transcript | LOC_Os02g53490.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACATATACTGCA-AA-CTCAGGGAATA-CATTGTCCAGGCATATGCAAAG GACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGEST: gi|218505618|gb|FG958833.1|FG958833
genomic: ACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGgtatacctgc ... tgccgctcagGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTG
EST: AGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAG GACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGEST: gi|3767106|gb|AU031216.1|AU031216
genomic: AGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGgtatacctgc ... tgccgctcagGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTG
EST: ACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAG GACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGEST: gi|14571407|gb|BI118775.1|BI118775
genomic: ACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGgtatacctgc ... tgccgctcagGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTG
EST: ACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAG GACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTANTGGCTGCTGTGEST: gi|218500992|gb|FG966562.1|FG966562
genomic: ACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGgtatacctgc ... tgccgctcagGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTG
EST: CATATACTAGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAG GACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGEST: gi|58680016|gb|CK068703.1|CK068703
genomic: CATATACT-GCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGgtatacctgc ... tgccgctcagGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTG
EST: ACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAG GACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGEST: gi|14571434|gb|BI118802.1|BI118802
genomic: ACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGgtatacctgc ... tgccgctcagGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTG
EST: ACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAG GACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTG
genomic: ACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGgtatacctgc ... tgccgctcagGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTG
ttgaaccggtgaaaactttgctgctctaaaattcagttgcctttgtgccgctcagGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTAC
ctctaaa putative branch site (score: 27)
cctttgt putative PPT
tctaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacctgccttgactatataataatcaattttgaagcaattgcagaagagcgtcacttgatttattcgaacgcaagagtgaaactatgaattgccttattgaaccggtgaaaactttgctgctctaaaattcagttgcctttgtgccgctcagGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA