1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tactagctgcatgatgcttgtttcttgcttctgtgttctatccagcctaactacctaatggtggaattgttaagaataattaactgacattcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTA
species | Oryza sativa |
transcript | LOC_Os02g49980.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|88342916|gb|CI640249.1|CI640249
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATEST: gi|88575977|gb|CI670122.1|CI670122
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGAT
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATACCATTCCGATAGCTAAAAGTGAEST: gi|88345402|gb|CI656060.1|CI656060
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCAEST: gi|58586064|gb|CF984372.1|CF984372
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|55442549|gb|CV734564.1|CV734564
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|88224685|gb|CI224534.1|CI224534
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAEST: gi|66923097|gb|CX109945.1|CX109945
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAEST: gi|88347247|gb|CI632532.1|CI632532
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAA
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCEST: gi|55414064|gb|CV726440.1|CV726440
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACC
EST: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
genomic: AGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcct ... tcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGA
cctaactacctaatggtggaattgttaagaataattaactgacattcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTA
aactgac putative branch site (score: 14)
aattgttaagaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactagctgcatgatgcttgtttcttgcttctgtgttctatccagcctaactacctaatggtggaattgttaagaataattaactgacattcaattgcagATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTA
- - - -tgcatga
- - - - - - - tgcttgt
- - - - - - - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - - - - -ccagcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaataa