1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtggttttttacagttcatttgatttatacttcagataactattgtatgttttgtaaagacatatatttttcaataaattgctatttcggatagcatgcaatttttcatgtacgacagtcatgatcttttccatcatttacttatttctcatgattgttcttcctttttctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGG
species | Oryza sativa |
transcript | LOC_Os02g42320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAG GAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGEST: gi|27576119|gb|CA998813.1|CA998813
genomic: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGgtggtttttt ... tctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAG
EST: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAG GAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGEST: gi|86493119|gb|CI135752.1|CI135752
genomic: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGgtggtttttt ... tctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAG
EST: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAG GAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGEST: gi|88852675|gb|CI008868.1|CI008868
genomic: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGgtggtttttt ... tctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAG
EST: AGCACAGCAGTATTATCGGTTGTACAAG GAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGEST: gi|88236034|gb|CI235236.1|CI235236
genomic: AGCACAGCAGTATTATCGGTTGTACAAGgtggtttttt ... tctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAG
EST: GAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAG GAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGEST: gi|86494880|gb|CI137513.1|CI137513
genomic: GAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGgtggtttttt ... tctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAG
EST: AACAAGCACAGCAGTATTATCGGTTGTACAAG GAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGEST: gi|29613823|gb|CB618836.1|CB618836
genomic: AACAAGCACAGCAGTATTATCGGTTGTACAAGgtggtttttt ... tctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAG
EST: TATTATCGGTTGTACAAG GAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGEST: gi|396941624|gb|HO188281.1|HO188281
genomic: TATTATCGGTTGTACAAGgtggtttttt ... tctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAG
EST: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAG GAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGEST: gi|25797837|gb|CA753798.1|CA753798
genomic: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGgtggtttttt ... tctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAG
EST: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAG GAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGEST: gi|56550165|gb|CX056269.1|CX056269
genomic: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGgtggtttttt ... tctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAG
EST: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAG GAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAG
genomic: TTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGgtggtttttt ... tctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAG
atcttttccatcatttacttatttctcatgattgttcttcctttttctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGG
ttctaat putative branch site (score: 2)
tttctcatgattgttc CT-rich tract
atcatttacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggttttttacagttcatttgatttatacttcagataactattgtatgttttgtaaagacatatatttttcaataaattgctatttcggatagcatgcaatttttcatgtacgacagtcatgatcttttccatcatttacttatttctcatgattgttcttcctttttctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT