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gtacaagatcactgtaaaacttgcttgttgtggtgatacttttggatgtgtctatgtgaatttcagttttttctacagttatggtttgagcacaacgaaaaacttaatacaataacattatacctattggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAATTTACAACTAGATTATCTCTACCACTGTTTACTGGTGGAAAAGTAGAA
species | Oryza sativa |
transcript | LOC_Os02g35470.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGTCCTGCCATAATTCAGGGAAG GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAEST: gi|58695876|gb|CK084563.1|CK084563
genomic: TGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAEST: gi|29675099|gb|CB671374.1|CB671374
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAEST: gi|29674900|gb|CB671175.1|CB671175
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAEST: gi|29677880|gb|CB674155.1|CB674155
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAEST: gi|58677698|gb|CK066385.1|CK066385
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: GCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGNCTTAEST: gi|29630082|gb|CB635091.1|CB635091
genomic: GCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAG-CTTA
EST: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAEST: gi|58686392|gb|CK075079.1|CK075079
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAEST: gi|29635770|gb|CB640779.1|CB640779
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAEST: gi|29626070|gb|CB631081.1|CB631081
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAEST: gi|29629686|gb|CB634695.1|CB634695
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
tggtttgagcacaacgaaaaacttaatacaataacattatacctattggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAATTTACAACTAGATTATCTCTACCACTGTTTACTGGTGGAAAAGTAGAA
caataac putative branch site (score: 2)
aaaaacttaatacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaagatcactgtaaaacttgcttgttgtggtgatacttttggatgtgtctatgtgaatttcagttttttctacagttatggtttgagcacaacgaaaaacttaatacaataacattatacctattggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAAATTTACAACTAGATTATCTCTACCACTGTTTACTGGTGGAAAAGTAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA