1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtaaccttttgatattgtttagcacttcgaaagtcccatgcatcttttttttcccgattttcgcctagaggctaacctcatatgctattatggtttcagGTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCTTCTAGTCCGCTGCCCAAAGAAGGCTGAGATTGTTGAGGAACTTTACAAA
species | Oryza sativa |
transcript | LOC_Os02g34500.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTG GTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCTEST: gi|88236742|gb|CI235944.1|CI235944
genomic: GGGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTGgtaattgtga ... atggtttcagGTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCT
EST: GGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTG GTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCTEST: gi|89192620|gb|CI049918.1|CI049918
genomic: GGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTGgtaattgtga ... atggtttcagGTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCT
EST: GGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTG GTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCTEST: gi|29627948|gb|CB632959.1|CB632959
genomic: GGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTGgtaattgtga ... atggtttcagGTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCT
EST: GGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTG GTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCTEST: gi|88451063|gb|CI534056.1|CI534056
genomic: GGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTGgtaattgtga ... atggtttcagGTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCT
EST: GTATCACTNTCATGGATGATCCAATATATGGGTCTCTCACTGATATTG GTTTCATGGATTTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCTEST: gi|88437353|gb|CI528712.1|CI528712
genomic: GTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTGgtaattgtga ... atggtttcagGTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCT
EST: GGTATCACTGTCAT-GANTGATCCCATATATGGGTCTCTCACTGATATTG GTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCT
genomic: GGTATCACTGTCATGGA-TGATCCAATATATGGGTCTCTCACTGATATTGgtaattgtga ... atggtttcagGTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCT
ttttttttcccgattttcgcctagaggctaacctcatatgctattatggtttcagGTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCTTCTAGTCCGCTGCCCAAAGAAGGCTGAGATTGTTGAGGAACTTTACAAA
ggctaac putative branch site (score: 16)
tattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaaccttttgatattgtttagcacttcgaaagtcccatgcatcttttttttcccgattttcgcctagaggctaacctcatatgctattatggtttcagGTTTCATGGATGTCTGGGGGCAGCCAACACAGGATGACTACGAGAAGTTCTTCTAGTCCGCTGCCCAAAGAAGGCTGAGATTGTTGAGGAACTTTACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - gcacttc
- - - - - - - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgc