1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caacctttggtagaacccacattgatatatatatatatatatatatatatatatatatatatatatatatatatattttgctactgttggaataattcagGTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCAGTTCAGGACAAGACTGTCTCTTCCTCTTTTTACTGGAGGAAAAGTTGAA
species | Oryza sativa |
transcript | LOC_Os02g08120.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAG GTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCAEST: gi|29630401|gb|CB635410.1|CB635410
genomic: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAGgtactctgtt ... aataattcagGTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCA
EST: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAG GTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCAEST: gi|58667966|gb|CK056652.1|CK056652
genomic: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAGgtactctgtt ... aataattcagGTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCA
EST: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAG GTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCAEST: gi|58605307|gb|CK033340.1|CK033340
genomic: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAGgtactctgtt ... aataattcagGTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCA
EST: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAG GTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCAEST: gi|29622550|gb|CB627561.1|CB627561
genomic: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAGgtactctgtt ... aataattcagGTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCA
EST: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAG GTCTTCCCCGAAGCAAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCAEST: gi|29635958|gb|CB640967.1|CB640967
genomic: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAGgtactctgtt ... aataattcagGTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCA
EST: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAG GTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCA
genomic: GAAGTGGAGCGTGCGTTGGGCAGACTGGGTCCTGCAACAATAACTGGAAGgtactctgtt ... aataattcagGTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCA
tatatatatatatatatatatatatatatattttgctactgttggaataattcagGTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCAGTTCAGGACAAGACTGTCTCTTCCTCTTTTTACTGGAGGAAAAGTTGAA
atatatatatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacctttggtagaacccacattgatatatatatatatatatatatatatatatatatatatatatatatatatattttgctactgttggaataattcagGTCTTCCCCGAAGCGAATTGAAGGTCCTGATGGAAGAAATCTGCAACTCCAGTTCAGGACAAGACTGTCTCTTCCTCTTTTTACTGGAGGAAAAGTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgg