1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aggctctaacgtgcactatgaatggtgcagtgtttgtgctgggatcatacaacatttcatacgcaatgcccaattcaactcacttctcttatccttgcagTCGCAGGCGGTTCGGGGAGCATCAAGCAGAGAACTGGTGGAACGAGAACCGGGAGAAGGTATATGAGAGGTACAACGTAAGAAGTTCCGAAAGAGTCTCG
species | Oryza sativa |
transcript | LOC_Os01g73410.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGACAACATTACGCGATGGGACTCGGGATCTGAAGCGGGTGCGCTTCAG TCGCAGGCGGTTCGGGGAGCATCAAGCAGAGAACTGGTGGAACGAGAACCGEST: gi|86430692|gb|CI083115.1|CI083115
genomic: CTGACAACATTACGCGATGGGACTCGGGATCTGAAGCGGGTGCGCTTCAGgtaaatcagg ... atccttgcagTCGCAGGCGGTTCGGGGAGCATCAAGCAGAGAACTGGTGGAACGAGAACCG
EST: ATTACGCGATGGGACTCGGGATCTGAAGCGGGTGCGCTTCAG TCGCAGGCGGTTCGGGGAGCATCAAGCAGAGAACTGGTGGAACGAGAACCGEST: gi|88991035|gb|CI108422.1|CI108422
genomic: ATTACGCGATGGGACTCGGGATCTGAAGCGGGTGCGCTTCAGgtaaatcagg ... atccttgcagTCGCAGGCGGTTCGGGGAGCATCAAGCAGAGAACTGGTGGAACGAGAACCG
EST: CTGACAACATTACGCGATGGGACTCGGGATCTGAAGCGGGTGCGCTTCAG TCGCAGTCGGTTCGGGGAGCATCAAGCAGAGAACTGGTGGAACGAGAACCG
genomic: CTGACAACATTACGCGATGGGACTCGGGATCTGAAGCGGGTGCGCTTCAGgtaaatcagg ... atccttgcagTCGCAGGCGGTTCGGGGAGCATCAAGCAGAGAACTGGTGGAACGAGAACCG
catacaacatttcatacgcaatgcccaattcaactcacttctcttatccttgcagTCGCAGGCGGTTCGGGGAGCATCAAGCAGAGAACTGGTGGAACGAGAACCGGGAGAAGGTATATGAGAGGTACAACGTAAGAAGTTCCGAAAGAGTCTCG
aactcac putative branch site (score: 7)
ctcacttctcttatcc CT-rich tract
atttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggctctaacgtgcactatgaatggtgcagtgtttgtgctgggatcatacaacatttcatacgcaatgcccaattcaactcacttctcttatccttgcagTCGCAGGCGGTTCGGGGAGCATCAAGCAGAGAACTGGTGGAACGAGAACCGGGAGAAGGTATATGAGAGGTACAACGTAAGAAGTTCCGAAAGAGTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - -cgtgcac
- - - - - - - - - - - tggtgca
- - - - - - - - - - - - - - - - - -gtgctgg
- - - - - - - - - - - - - - - - - - - - - - -catacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgccc