1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttatctcataaaactactcattattttccccgaaagttatatgaattttgagcgtatttttgaagaatgctggaagtcaaaacttgcaaaagatatcacatcatcctggatataacctgttcacttttcactctacagGGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTAAGTGTGCAACACCCAGAGGAAAATAAGCAAGTTGCACCTGCTGAACTGT
species | Oryza sativa |
transcript | LOC_Os01g71280.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAG GGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTAEST: gi|86495999|gb|CI138632.1|CI138632
genomic: AACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAGgttatctcat ... cactctacagGGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTA
EST: AACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAG GGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTAEST: gi|89170602|gb|CI039879.1|CI039879
genomic: AACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAGgttatctcat ... cactctacagGGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTA
EST: GGGGATGATTCAG GGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCAAGCTTAEST: gi|86838575|gb|CI329082.1|CI329082
genomic: GGGGATGATTCAGgttatctcat ... cactctacagGGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTA
EST: TCAAGGGGAAGGGGATGATTCAG GGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTAEST: gi|29623740|gb|CB628751.1|CB628751
genomic: TCAAGGGGAAGGGGATGATTCAGgttatctcat ... cactctacagGGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTA
EST: AACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAG GGTATCTCTGCTGTTGGTGCATTTTTTGAACTTCTCAGTCAACCCAGCTTAEST: gi|87007411|gb|CI279082.1|CI279082
genomic: AACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAGgttatctcat ... cactctacagGGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTA
EST: AACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAG GGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTA
genomic: AACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAGgttatctcat ... cactctacagGGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTA
ttgcaaaagatatcacatcatcctggatataacctgttcacttttcactctacagGGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTAAGTGTGCAACACCCAGAGGAAAATAAGCAAGTTGCACCTGCTGAACTGT
atataac putative branch site (score: 12)
ttcacttttcactct putative PPT
aaagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatctcataaaactactcattattttccccgaaagttatatgaattttgagcgtatttttgaagaatgctggaagtcaaaacttgcaaaagatatcacatcatcctggatataacctgttcacttttcactctacagGGTATCTCTGCTGTTGGTGCATTTTTTGAGCTTCTCAGTCAACCCAGCTTAAGTGTGCAACACCCAGAGGAAAATAAGCAAGTTGCACCTGCTGAACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG