1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taacatcatagtttgttgtacaagtcctaagcattaattttgcaatgattgtgcattctcttacgatgatgtctctgagctatctatattaatgtttcagGTGTACCCAGCTATGTACGGGGATGATAAAACTAGACTCTTCATCTATTGGACT
species | Oryza sativa |
transcript | LOC_Os01g37000.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tgattgtgcattctcttacgatgatgtctctgagctatctatattaatgtttcagGTGTACCCAGCTATGTACGGGGATGATAAAACTAGACTCTTCATCTATTGGACT
tattaat putative branch site (score: 24)
tatctatattaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacatcatagtttgttgtacaagtcctaagcattaattttgcaatgattgtgcattctcttacgatgatgtctctgagctatctatattaatgtttcagGTGTACCCAGCTATGTACGGGGATGATAAAACTAGACTCTTCATCTATTGGACT
-aacatca
- - - - - - ttgttgt
- - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - -tgattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgt