1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttaacgacataaaggtttttaactcacccaacctttacatctctgtgaattataatttgattgataacctaacatattgctgttgtttttcatttgcagAATAGCCCTGTACTACGGAACCGGCTGATGAACAAGGAGCTTGATCCTCCAGTCCTGTTAACAATGTCTCCTGACGAACTAAAG
species | Oryza sativa |
transcript | LOC_Os01g34330.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTTCCAGAAGTATAACCAGAAATTGAGACAGTTACTGTTCAACATCAAG AATAGCCCTGTACTACGGAACCGGCTGATGAACAAGGAGCTTGATCCTCCAEST: gi|58658620|gb|CK047300.1|CK047300
genomic: ACTTCCAGAAGTATAACCAGAAATTGAGACAGTTACTGTTCAACATCAAGgtatgtcctg ... tcatttgcagAATAGCCCTGTACTACGGAACCGGCTGATGAACAAGGAGCTTGATCCTCCA
EST: ACTTCCAGAAGTATAACCAGAAATTGAGACAGTTACTGTTCAACATCAAG AATAGCCCTGTACTACGGAACCGGCTGATGAACAAGGAG
genomic: ACTTCCAGAAGTATAACCAGAAATTGAGACAGTTACTGTTCAACATCAAGgtatgtcctg ... tcatttgcagAATAGCCCTGTACTACGGAACCGGCTGATGAACAAGGAG
gtgaattataatttgattgataacctaacatattgctgttgtttttcatttgcagAATAGCCCTGTACTACGGAACCGGCTGATGAACAAGGAGCTTGATCCTCCAGTCCTGTTAACAATGTCTCCTGACGAACTAAAG
acctaac putative branch site (score: 2)
tttttcattt putative PPT
ttataatttgattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaacgacataaaggtttttaactcacccaacctttacatctctgtgaattataatttgattgataacctaacatattgctgttgtttttcatttgcagAATAGCCCTGTACTACGGAACCGGCTGATGAACAAGGAGCTTGATCCTCCAGTCCTGTTAACAATGTCTCCTGACGAACTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT