1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taatctctatgccccttatcgaccaaaatttgaaacttctcgtagtatattttttagcacaggcttttaaaacactaacaactcggatatactcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG
species | Oryza sativa |
transcript | LOC_Os01g16146.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAG GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAEST: gi|88275856|gb|CI396460.1|CI396460
genomic: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgat ... actcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGA
EST: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGA- GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAEST: gi|88511717|gb|CI439223.1|CI439223
genomic: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgat ... actcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGA
EST: ATTATNACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAG GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAEST: gi|88223894|gb|CI223743.1|CI223743
genomic: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgat ... actcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGA
EST: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAG GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAEST: gi|86522833|gb|CI163039.1|CI163039
genomic: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgat ... actcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGA
EST: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAG GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAEST: gi|88264915|gb|CI367566.1|CI367566
genomic: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgat ... actcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGA
EST: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAG GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAEST: gi|88218690|gb|CI218539.1|CI218539
genomic: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgat ... actcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGA
EST: ATTATGACTTCTGTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAG GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAEST: gi|88979995|gb|CI026285.1|CI026285
genomic: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgat ... actcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGA
EST: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAG GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAEST: gi|33808573|gb|CF330172.1|CF330172
genomic: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgat ... actcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGA
EST: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAG GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAEST: gi|86483314|gb|CI125947.1|CI125947
genomic: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgat ... actcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGA
EST: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAG GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAEST: gi|88258968|gb|CI363261.1|CI363261
genomic: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgat ... actcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGA
EST: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAG GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGCCACCTTACTGGGGTGGA
genomic: ATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgat ... actcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGA
tatattttttagcacaggcttttaaaacactaacaactcggatatactcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG
cactaac putative branch site (score: 6)
tactctt putative PPT
ttttaaaacactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatctctatgccccttatcgaccaaaatttgaaacttctcgtagtatattttttagcacaggcttttaaaacactaacaactcggatatactcttacagGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - -tatgccc
- - - - - - - - - - gaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaact