1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatttcttaattgacatcagtactgatataaagtcacgtacactatacgtcaatttgcatatcaaataggagtttctatccatcacagGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGT
species | Oryza sativa |
transcript | LOC_Os01g07090.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAG GTCAATCATGATCCTCAGCTTCTTCTAATGEST: gi|88305014|gb|CI566068.1|CI566068
genomic: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAGgtatttctta ... tccatcacagGTCAATCATGATCCTCAGCTTCTTCTAATG
EST: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAG GT-AATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACA-CTEST: gi|86596621|gb|CI286534.1|CI286534
genomic: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAGgtatttctta ... tccatcacagGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACT
EST: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAG GTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGEST: gi|117230125|gb|CT846221.1|CT846221
genomic: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAGgtatttctta ... tccatcacagGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATG
EST: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGATGAG GTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTEST: gi|55413991|gb|CV726367.1|CV726367
genomic: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAGgtatttctta ... tccatcacagGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACT
EST: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAG GTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTEST: gi|13420770|gb|AU174860.1|AU174860
genomic: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAGgtatttctta ... tccatcacagGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACT
EST: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAG GTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTEST: gi|29641053|gb|CB646060.1|CB646060
genomic: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAGgtatttctta ... tccatcacagGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACT
EST: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAG GTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACT
genomic: TTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAGgtatttctta ... tccatcacagGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACT
tcacgtacactatacgtcaatttgcatatcaaataggagtttctatccatcacagGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGT
tttctatcc CT-rich tract
atatcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcttaattgacatcagtactgatataaagtcacgtacactatacgtcaatttgcatatcaaataggagtttctatccatcacagGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC