1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtttttcatgtcatatttatgtttaaatagctgatgctttgctgtgaattttataaagattcaactctcatataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTGCAGGACTGAAG
species | Oryza sativa |
transcript | LOC_Os01g01710.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTGATTGGAAGCCAGAAATTTATTCCTGGTGAGCAAGGTTGTCATAGAG GTTGCTCGCCAACCC-GATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGEST: gi|58607529|gb|CK035562.1|CK035562
genomic: TGTGATTGGAAGCCAGAAATT-ATTCCTGGTGAGCAAGGT-GTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCA-CCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTG
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|58689337|gb|CK078024.1|CK078024
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCAACCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|86905401|gb|CI285364.1|CI285364
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAEST: gi|33676538|gb|CF304777.1|CF304777
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATA
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGGTGEST: gi|29613664|gb|CB618677.1|CB618677
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGG-TG
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|29620639|gb|CB625650.1|CB625650
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|29688464|gb|CB684739.1|CB684739
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|29681868|gb|CB678143.1|CB678143
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|58688271|gb|CK076958.1|CK076958
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGEST: gi|29617049|gb|CB622061.1|CB622061
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGG
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|33663679|gb|CF294646.1|CF294646
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATEST: gi|29620626|gb|CB625637.1|CB625637
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGAT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|58607277|gb|CK035310.1|CK035310
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCAGCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|58588201|gb|CF986509.1|CF986509
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|29620641|gb|CB625652.1|CB625652
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|33381852|gb|CF197195.1|CF197195
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|58688021|gb|CK076708.1|CK076708
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|58589270|gb|CF987578.1|CF987578
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTEST: gi|58690161|gb|CK078848.1|CK078848
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
EST: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAG GTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
genomic: ATTGTGATTGGAAGCCAGAAATTATTCCTGGTGAGCAAGGTGTCATAGAGgtgagttttt ... catataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGT
taaatagctgatgctttgctgtgaattttataaagattcaactctcatataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTGCAGGACTGAAG
agctgat putative branch site (score: 4)
ctctcat putative PPT
aattttataaagattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttttcatgtcatatttatgtttaaatagctgatgctttgctgtgaattttataaagattcaactctcatataatagGTTGCTCGCCACCCAGATGCAGTTACAGTTGTTACTGGGATAGTAGGGTGTGCAGGACTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG