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...caacaagctcaaacatttttttttcaaattcaaaatatatctcattcttgctagggggcttatagaagtttttttttttttttactttttgttccttcagGTTGTCGTTAACAGTGAAATGATCGAGTACTATGACATATCCGGTTGTTATATCTTGAGGCCATGGGCGATGGAGATCTGGGAATTGCTTAAA
species | Oryza sativa |
transcript | LOC_Os12g25710.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGGGATGGCGTACAAGAAGGATGACAACTTCGGGGAGTGGTACTCCGAG GTTGTCGTTAACAGTGAAATGATCGAGTACTATGACATATCCGGTTGTTATEST: gi|58674015|gb|CK062701.1|CK062701
genomic: TCGGGATGGCGTACAAGAAGGATGACAACTTCGGGGAGTGGTACTCCGAGgttggttttt ... gttccttcagGTTGTCGTTAACAGTGAAATGATCGAGTACTATGACATATCCGGTTGTTAT
EST: TCGGGATGGCGTACAAGAAGGATGACAACTTCGGGGAGTGGTACTCCGAG GTTGTCGTTAACAGTGAAATGATCGAGTACTATGACATATCCGGTTGTTATEST: gi|29635079|gb|CB640088.1|CB640088
genomic: TCGGGATGGCGTACAAGAAGGATGACAACTTCGGGGAGTGGTACTCCGAGgttggttttt ... gttccttcagGTTGTCGTTAACAGTGAAATGATCGAGTACTATGACATATCCGGTTGTTAT
EST: TCGGGATGGCGTACAAGAAGGATGACAACTTCGGGGAGTGGTACTCCGAG GTTGTCGTTAACAGTGAAATGATCGAGTACTATGACATATCCGGTTGTTATEST: gi|58652586|gb|CK041266.1|CK041266
genomic: TCGGGATGGCGTACAAGAAGGATGACAACTTCGGGGAGTGGTACTCCGAGgttggttttt ... gttccttcagGTTGTCGTTAACAGTGAAATGATCGAGTACTATGACATATCCGGTTGTTAT
EST: CGGGAATGGCGTACAAGAAGGATGACAACTTCGGGGAGTGGTACTCCGAG GTTGTCGTTAACAGTGAAATGATCGAGTACTATGACATATCCGGTTGGGAT
genomic: CGGG-ATGGCGTACAAGAAGGATGACAACTTCGGGGAGTGGTACTCCGAGgttggttttt ... gttccttcagGTTGTCGTTAACAGTGAAATGATCGAGTACTATGACATATCCGGTTGTTAT
tcttgctagggggcttatagaagtttttttttttttttactttttgttccttcagGTTGTCGTTAACAGTGAAATGATCGAGTACTATGACATATCCGGTTGTTATATCTTGAGGCCATGGGCGATGGAGATCTGGGAATTGCTTAAA
ttttttttttttttta CT-rich tract
ttatagaagttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacaagctcaaacatttttttttcaaattcaaaatatatctcattcttgctagggggcttatagaagtttttttttttttttactttttgttccttcagGTTGTCGTTAACAGTGAAATGATCGAGTACTATGACATATCCGGTTGTTATATCTTGAGGCCATGGGCGATGGAGATCTGGGAATTGCTTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC