1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcttcactgaactctaaacatcttactttactttatctgtacatgttccagtaacttgccatgttgcccattattatttgtctccgaattctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGATCGCCGAGTTCCTTCACCAGGCAGTGACCATCTGCTTGGATGTTCAGAA
species | Oryza sativa |
transcript | LOC_Os12g22030.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTCACCTG-TG-TGTCCGCATTG GTACACCTGCCATGACATCAAGGG-TTTGTTAGAGGAGGACTTTGTACAGAEST: gi|29661231|gb|CB657506.1|CB657506
genomic: ATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAEST: gi|86486835|gb|CI129468.1|CI129468
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAA
EST: TGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|88993404|gb|CI257832.1|CI257832
genomic: TGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|88731473|gb|CI755086.1|CI755086
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|86521243|gb|CI161449.1|CI161449
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|88220283|gb|CI219843.1|CI219843
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: CCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|88222686|gb|CI220827.1|CI220827
genomic: CCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|86412835|gb|CI067240.1|CI067240
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: GCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|86520924|gb|CI161130.1|CI161130
genomic: GCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|86514112|gb|CI156745.1|CI156745
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|86887626|gb|CI294260.1|CI294260
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|87027893|gb|CI276249.1|CI276249
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|86521226|gb|CI161432.1|CI161432
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|58589560|gb|CF987868.1|CF987868
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|86510331|gb|CI152964.1|CI152964
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: CCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|218489698|gb|FG969212.1|FG969212
genomic: CCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGAAGGACTTTGTACAGAEST: gi|88203576|gb|CI203425.1|CI203425
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|86490953|gb|CI133586.1|CI133586
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|86435459|gb|CI106692.1|CI106692
genomic: TGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|88976061|gb|CI024306.1|CI024306
genomic: TGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGAEST: gi|89174045|gb|CI041938.1|CI041938
genomic: TGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
EST: GCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG GTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
genomic: GCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTGgtcagtatct ... ctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGA
ttccagtaacttgccatgttgcccattattatttgtctccgaattctggttccagGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGATCGCCGAGTTCCTTCACCAGGCAGTGACCATCTGCTTGGATGTTCAGAA
cagtaac putative branch site (score: 2)
attattatttgtct TA-rich tract