1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagaagcacattcttctgaagagaatgcagtttctgtaagatcttcctaggatggtaacaatcttagcactactaactgacatgatgaactgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCGACGCCTTCGGACCAGAGGTGATCGGTGAAAATGTTGAAGGGAAGGTTTT
species | Oryza sativa |
transcript | LOC_Os12g08830.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG AACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCGEST: gi|33673774|gb|CF302013.1|CF302013
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
EST: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG AACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCGEST: gi|86849405|gb|CI299632.1|CI299632
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
EST: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG AACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCGEST: gi|38478054|gb|CF962187.1|CF962187
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
EST: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG AACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCGEST: gi|14571429|gb|BI118797.1|BI118797
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
EST: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG AACTCGACGATGCGACAACTGAAAAGATCGGTEST: gi|88839416|gb|CI005204.1|CI005204
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGT
EST: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG AACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCGEST: gi|88965272|gb|CI009308.1|CI009308
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
EST: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG AACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
tcctaggatggtaacaatcttagcactactaactgacatgatgaactgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCGACGCCTTCGGACCAGAGGTGATCGGTGAAAATGTTGAAGGGAAGGTTTT
taacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaagcacattcttctgaagagaatgcagtttctgtaagatcttcctaggatggtaacaatcttagcactactaactgacatgatgaactgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCGACGCCTTCGGACCAGAGGTGATCGGTGAAAATGTTGAAGGGAAGGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG