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gtatttgtactgttaaaattatttgccattgtaccttgttcagttgatttcatttgaggagtacttccatttgtcacatgcttataataattgaactgtacatttcgacatcagGCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAAG
species | Oryza sativa |
transcript | LOC_Os11g47330.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAG GCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAAEST: gi|38478269|gb|CF962402.1|CF962402
genomic: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAGgtatttgtac ... tcgacatcagGCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAA
EST: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAG GCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAAEST: gi|117247393|gb|CT848567.1|CT848567
genomic: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAGgtatttgtac ... tcgacatcagGCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAA
EST: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAG GCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAAEST: gi|33670036|gb|CF298275.1|CF298275
genomic: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAGgtatttgtac ... tcgacatcagGCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAA
EST: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAG GCACGTGGAAAAATTGGTGATTTCAEST: gi|88690955|gb|CI735034.1|CI735034
genomic: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAGgtatttgtac ... tcgacatcagGCACGTGGAAAAATTGGTGATTTCA
EST: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAG GCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAAEST: gi|88690505|gb|CI734584.1|CI734584
genomic: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAGgtatttgtac ... tcgacatcagGCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAA
EST: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAG GCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAA
genomic: CAATGACACCTGATGCATGTGCTCCCTTGATTGCTACCCTTCCATTGGAGgtatttgtac ... tcgacatcagGCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAA
agtacttccatttgtcacatgcttataataattgaactgtacatttcgacatcagGCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAAG
ttataataattgaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgtactgttaaaattatttgccattgtaccttgttcagttgatttcatttgaggagtacttccatttgtcacatgcttataataattgaactgtacatttcgacatcagGCACGTGGAAAAATTGGTGATTTCATTAAAGGAGTCTTTGCTGTTTTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT