1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttctcccttctttttgggagtgattaaattgtctgttacattcccatgcaaattgtactatattggtgcaatgatatgcagttactctctgttctgtagGTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAGGGGACCCCATTTCACACCCTCCTTGCTGAAGGCTTTGCTGATGGACCAA
species | Oryza sativa |
transcript | LOC_Os11g36070.5 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAATGAACGATCTTCGAAGATTCATGAGGCATCACATAAAGAATGGAAG GTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAGEST: gi|86825222|gb|CI359919.1|CI359919
genomic: GGAATGAACGATCTTCGAAGATTCATGAGGCATCACATAAAGAATGGAAGgtatgcattg ... tgttctgtagGTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAG
EST: GGAATGAACGATCTTCGAAGATTCATGAGGCATCACATAAAGAATGGAAG GTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAGEST: gi|88352092|gb|CI626092.1|CI626092
genomic: GGAATGAACGATCTTCGAAGATTCATGAGGCATCACATAAAGAATGGAAGgtatgcattg ... tgttctgtagGTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAG
EST: GGAATGAACGATCTTCGAAGATTCATGAGGCATCACATAAAGAATGGAAG GTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAGEST: gi|88730714|gb|CI754327.1|CI754327
genomic: GGAATGAACGATCTTCGAAGATTCATGAGGCATCACATAAAGAATGGAAGgtatgcattg ... tgttctgtagGTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAG
EST: GGAATGAACGATCTTCGAAGATTCATGAGGCATCACATAAAGAATGGAAG GTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAGEST: gi|88731451|gb|CI755064.1|CI755064
genomic: GGAATGAACGATCTTCGAAGATTCATGAGGCATCACATAAAGAATGGAAGgtatgcattg ... tgttctgtagGTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAG
EST: GGAATGAACGATCTTCGAAGATTCATGAGGCATCACATAAAGAATGGAAG GTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAG
genomic: GGAATGAACGATCTTCGAAGATTCATGAGGCATCACATAAAGAATGGAAGgtatgcattg ... tgttctgtagGTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAG
catgcaaattgtactatattggtgcaatgatatgcagttactctctgttctgtagGTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAGGGGACCCCATTTCACACCCTCCTTGCTGAAGGCTTTGCTGATGGACCAA
ttactctctgttct CT-rich tract
aaattgtactatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctcccttctttttgggagtgattaaattgtctgttacattcccatgcaaattgtactatattggtgcaatgatatgcagttactctctgttctgtagGTGAAGCAAGACACGGACCAATTACGAGTTATGTATCGCGAGGGACCAGAGGGGACCCCATTTCACACCCTCCTTGCTGAAGGCTTTGCTGATGGACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA