Sequence
atgc intronic sequence ATGC exonic sequence...tagctcaccagttcacttttacctaaactctatatatgagctgatttcctgtcaaagatcaggatagaaaagcacaactcactttaccattctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATG
Basic information
| species | Oryza sativa |
| transcript | LOC_Os11g33240.3 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os11g33240.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G063909_T02 (Zea mays), 3'ss of exon 3
--tagctcaccagttcacttttacctaaactctatatatgagctgatttcctgtcaaagatcaggatagaaaag-cacaactcactttaccattctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATG
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tacttcacacctggtttacctaaccacttctcttcgtggaatatgaatgcctgttcatcttggccttgctcttctcagaagttagtctgcc---ttgttacagGACCGCTTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATG
upper sequence: LOC_Os11g33240.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G064023_T04 (Zea mays), 3'ss of exon 4
-----tagctcaccagttcacttttacctaaactctatatatgagctgatttcctgtcaaagatcaggatagaaaagcacaactcactttaccattctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATG
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ctacttaacacat-ggttta-tctaaccacctgtcttcgtggaatatgaatgcctgtt---catctggccttgctgttctcagaaattagtatgccttgttacagGATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATG
upper sequence: LOC_Os11g33240.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G063851_T02 (Zea mays), 3'ss of exon 4
----tagctcaccagttcacttttacctaaactctatatatgagctgatttcctgtcaaagatcaggatagaaaagcacaactcactttaccattctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATG
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ataaaagtttattatgaaaatctactttgtactttgtttatctacccacctgtcttca----tctggccttgctgttctcatatgttagtctgttttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAACATAACTGTGGATATG
upper sequence: LOC_Os11g33240.3 (Oryza sativa), 3'ss of exon 3
lower sequence: AT2G44350.2 (Arabidopsis thaliana), 3'ss of exon 4
------------------------------------tagctcaccagttcacttttacctaaactctatatatgagctgatttcctgtcaaagatc---aggatagaaaagca------------caactcactttaccattctggta------------------------------cagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATG
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gttagattagactctgtttgctttaaatgaaaatttgtgttgttgacttttttttttcattgaatgtgtgtattatttgttatgttagctgagattgttaagttaagaaggcaggctagttgtagtgaatctctttgcttttctagtttcctcttttctcacaagaattttccaatttcagGACCGTCTGAAGAAACTGAAGTCAGAACATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86904765|gb|CI310558.1|CI310558EST: GATTCCCGAGCAACAG GATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAAC
genomic: GATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcctgtcaaagatcaggatagaaaagcacaactcactttaccattctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATG
aactcac putative branch site (score: 2)
ccattct putative PPT
atagaaaa TA-rich tract
