Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccaacatcaaagctgggttcttcatagcatgtctaatgccactgctgcttggttgctaataccgctgaccctattatacttgtatatgataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAAGAGTGTTTTTGGTGAGGATGCATTGGTGAACATCAGCGTTGAAAAGCAA

Basic information

species Oryza sativa
transcript LOC_Os11g07280.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g07280.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G094699_T01 (Zea mays), 3'ss of exon 3
ttccaacatcaaagctgggttcttcatagcatgtctaatgccactgctgcttggttgctaataccgctgaccctattatacttgtatatga-taacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAAGAGTGTTTTTGGTGAGGATGCATTGGTGAACATCAGCGTTGAAAAGCAA
| |    |   |     || |   ||||  |       |||         |||  ||||      ||| |  | |||   ||  | |   | |  ||||||||||||||| |||||||||||||||||  | ||||| |||||||||||||||||||| ||||| ||||| ||  ||||||| ||||| ||||| ||||| 
tacttgaagttatataaggctagacatatgaaaaactctgcgctgtgcatttgaatgctttgtttgctaaggc-attgctctcattttctacttgcatcagATCTGCGCTCGATGGAGAATGTGGGTTCCTTGCTGCAAATCTCTATGCCAAGAGTGTGTTTGGCGAGGACGCTCTGGTGAATATCAGTGTTGAGAAGCAG

upper sequence: LOC_Os11g07280.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G23780.1 (Glycine max), 3'ss of exon 3
--ttccaa-catcaaagctgggttcttcatagcatgtctaatgccactgctgcttggttgctaataccgctgaccctattatacttgtat-atgataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAAGAGTGTTTTTGGTGAGGATGCATTGGTGAACATCAGCGTTGAAAAGCAA
  | | || ||| || |   ||   |  | | ||| | | ||| ||    |   |||   |  || ||    |  | |||    |||  |  |  |    | ||||| ||  | || || || ||||| ||  | ||||| || || ||||| |||||||||||||| || ||||| ||||||||  | ||| |||||||||||
cgtactaatcattaatgtgtggacat--aaaacat-tgttatgtcatgattttatggggacccattccatataatc-atttggtttgcgttgttgtttgtttagATCGGCATTGGAAGGGGATTGTGGATTCCTTGCTGCAAACCTTTATGCTAAGAGTGTTTTTGGGGAAGATGCTTTGGTGAATGTGAGCATTGAAAAGCAA

upper sequence: LOC_Os11g07280.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA07G00610.1 (Glycine max), 3'ss of exon 3
-----ttccaacatcaaagctgggttcttcatagcatgtctaatgccactgctgcttggttgctaataccgctgaccctattatactt-gtatatgataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAAGAGTGTTTTTGGTGAGGATGCATTGGTGAACATCAGCGTTGAAAAGCAA
     || ||||||   |  |   ||  | ||      | ||  | || |    | | |||    ||| |  |||   |||     || |  | |  |    | ||||| ||  | || || || ||||| ||  | ||||| || || ||||| |||||||||||||| || ||||| ||||||||  | ||| |||||||||||
tattatttcaacatttcatgttacttactaatcattaatgtatggaca-taaaacattgtt----atatc-ttgattttatggggttttggttgttgtttgtttagATCGGCATTGGAAGGGGATTGTGGATTCCTTGCTGCAAACCTTTATGCTAAGAGTGTTTTTGGGGAAGATGCTTTGGTGAATGTGAGCATTGAAAAGCAA

upper sequence: LOC_Os11g07280.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S42_100V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------------------------------ttccaacatcaaagctgggttct-tcatagcatgtc-taatgccactgctgcttggttgc-----taataccgctgaccctattatacttgtatatgataacat---cagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAAGAGTGTTTTTGGTGAGGATGCATTGGTGAACATCAGCGTTGAAAAGCAA
                                     ||  | | |     ||   ||   | ||| |||||  |||||  |    |    |||  |     | || ||| | | |  ||| | |   |   ||    |||   ||| |||||  | || ||||| ||||| ||| | ||||||||||| ||||| |||||||||||||| |||||||| ||||| ||  | ||| |||| || |||
gtaagtctttgtttacacctgcaagtaatatctggtcttttatcttttcgcctttttttcataatatcatgttataatggaagatgtatcgggtgacctacttcattccgttaatctaatttttcgctttattgtcgtcatgagcagGTCTGCATTGGAGGGAGACTGTGGTTTTCTTGCTGCTAATCTTTATGCTAAGAGTGTTTTTGGAGAGGATGCTTTGGTCAATGTTAGCATTGAGAAACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87039344|gb|CI193966.1|CI193966
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86520094|gb|CI160300.1|CI160300
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88247083|gb|CI246932.1|CI246932
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86521056|gb|CI161262.1|CI161262
EST:     AAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: AAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|29630805|gb|CB635814.1|CB635814
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86521223|gb|CI161429.1|CI161429
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86521095|gb|CI161301.1|CI161301
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87016415|gb|CI273625.1|CI273625
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87014805|gb|CI271404.1|CI271404
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86858225|gb|CI271117.1|CI271117
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ACCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88236124|gb|CI235326.1|CI235326
EST:     TTTTTGGATCATATCACCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88229076|gb|CI228952.1|CI228952
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTGTCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86477387|gb|CI120020.1|CI120020
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|33676043|gb|CF304282.1|CF304282
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88993204|gb|CI108832.1|CI108832
EST:     TTTTTGGATCGTATCATCGGATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTGCTATGCCA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCT-CTATGCCA
EST: gi|87040269|gb|CI194891.1|CI194891
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86478378|gb|CI121011.1|CI121011
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88233731|gb|CI233580.1|CI233580
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACT                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87039720|gb|CI194342.1|CI194342
EST:     ACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: ACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88989830|gb|CI018708.1|CI018708
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88197668|gb|CI197518.1|CI197518
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86478308|gb|CI120941.1|CI120941
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87038936|gb|CI193558.1|CI193558
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|89163208|gb|CI100098.1|CI100098
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACT                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86597005|gb|CI272600.1|CI272600
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87035862|gb|CI190484.1|CI190484
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87014992|gb|CI271591.1|CI271591
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88198577|gb|CI198427.1|CI198427
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87014898|gb|CI271497.1|CI271497
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACGCCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTGATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88198630|gb|CI198480.1|CI198480
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86592998|gb|CI270555.1|CI270555
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|51946041|gb|CV152382.1|CV152382
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87036189|gb|CI190811.1|CI190811
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86597625|gb|CI274616.1|CI274616
EST:     CATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: CATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87040560|gb|CI195182.1|CI195182
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86597765|gb|CI274756.1|CI274756
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86481172|gb|CI123805.1|CI123805
EST:     CAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATCTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: CAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88234904|gb|CI232755.1|CI232755
EST:     CAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: CAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88197993|gb|CI197843.1|CI197843
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87039782|gb|CI194404.1|CI194404
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88197752|gb|CI197602.1|CI197602
EST:     ATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: ATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86868050|gb|CI331836.1|CI331836
EST:     TGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCCCTGCTAATCTCTATGCCAA
genomic: TGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86521048|gb|CI161254.1|CI161254
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88251531|gb|CI349959.1|CI349959
EST:     TATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCCCTGCTAATCTCTATGCCAA
genomic: TATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87040139|gb|CI193348.1|CI193348
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGTGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87036024|gb|CI189471.1|CI189471
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCCA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATG-CCA
EST: gi|86521002|gb|CI161208.1|CI161208
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86481313|gb|CI123946.1|CI123946
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAGGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87041838|gb|CI196460.1|CI196460
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87038971|gb|CI193593.1|CI193593
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|58677417|gb|CK066104.1|CK066104
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88198201|gb|CI198051.1|CI198051
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88197782|gb|CI197632.1|CI197632
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86513836|gb|CI156469.1|CI156469
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87030272|gb|CI270282.1|CI270282
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87031727|gb|CI272428.1|CI272428
EST:     TCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|88234858|gb|CI232709.1|CI232709
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86859014|gb|CI276961.1|CI276961
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86477487|gb|CI120120.1|CI120120
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|86436845|gb|CI118567.1|CI118567
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87036841|gb|CI191463.1|CI191463
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87039000|gb|CI193622.1|CI193622
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87036825|gb|CI191447.1|CI191447
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
EST: gi|87035268|gb|CI189890.1|CI189890
EST:     TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACC                         ATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA
genomic: TTTTTGGATCATATCATCAAATCGACAAATATGAAGTGTCTAACACCACCgtaagttaca ... ataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgcttggttgctaataccgctgaccctattatacttgtatatgataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAAGAGTGTTTTTGGTGAGGATGCATTGGTGAACATCAGCGTTGAAAAGCAA
                                           tgataac  putative branch site (score: 2)
                            tattatacttgtatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttccaacatcaaagctgggttcttcatagcatgtctaatgccactgctgcttggttgctaataccgctgaccctattatacttgtatatgataacatcagATCTGCGCTTGATGGAGAATGTGGGTTTATCGCTGCTAATCTCTATGCCAAGAGTGTTTTTGGTGAGGATGCATTGGTGAACATCAGCGTTGAAAAGCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - catcaaa
- - - - - - - - - - - - - - gcatgtc
- - - - - - - - - - - - - - - - - - -atgccac
- - - - - - - - - - - - - - - - - - - - - - tgctgct
- - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtat