1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctgttgtctttacctatgcacctccatcttgaaatttcaaatcacgtagatgctgttatatactttatatgtacattcagttgcatttaaactgttaattcttgcttatatagtctatggcaattatatatgcagAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATCTGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTA
species | Oryza sativa |
transcript | LOC_Os09g11250.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAAAGTATGCTGTGCAG AATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAA-TTGACNTAGAGCATCEST: gi|25806684|gb|CA762645.1|CA762645
genomic: AAAAAGTATGCTGTGCAGgtctgttgtc ... atatatgcagAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGAC-TAGAGCATC
EST: TAGCTAGGACAAAGCGTGAATCTGAGAACTCAAAAAAGTATGCTGTGCAG AATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCA
genomic: TAGCTAGGACAAAGCGTGAATCTGAGAACTCAAAAAAGTATGCTGTGCAGgtctgttgtc ... atatatgcagAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCA
ttgcatttaaactgttaattcttgcttatatagtctatggcaattatatatgcagAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATCTGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTA
tgttaat putative branch site (score: 17)
tttaaactgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgttgtctttacctatgcacctccatcttgaaatttcaaatcacgtagatgctgttatatactttatatgtacattcagttgcatttaaactgttaattcttgcttatatagtctatggcaattatatatgcagAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATCTGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA