1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acttcatttttgtacttcaatatagtaattgaaagtggaagtctaattttcatatgtacataactaatactcttctacccctatgtgtggactatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGCCTAGAGAAGCAGCTTGATTCATCCCTGAAGCACGTCAGAACTACAAGG
species | Oryza sativa |
transcript | LOC_Os08g41950.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG AAATTTGCTGGGTGAACATCTTGATTCATTAEST: gi|58663584|gb|CK052270.1|CK052270
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTA
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG AAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGEST: gi|88720377|gb|CI743676.1|CI743676
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAG
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG AAATTTGCTGGGTGAAGATCTTGATTCATEST: gi|2799584|gb|AA752573.1|AA752573
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGGTGAAGATCTTGATTCAT
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG AAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGEST: gi|40491399|gb|BX901494.1|BX901494
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAG
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG AAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGEST: gi|163926627|gb|EG713643.1|EG713643
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAG
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG AAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGEST: gi|24208827|gb|AU225854.1|AU225854
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAG
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG AAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGEST: gi|88461647|gb|CI695489.1|CI695489
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAG
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG AAATTTGCTGGGTGAAGATCTTGATTCAEST: gi|88726869|gb|CI750524.1|CI750524
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGGTGAAGATCTTGATTCA
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG AAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGEST: gi|66932169|gb|CX119017.1|CX119017
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAG
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG AAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGEST: gi|88313445|gb|CI671563.1|CI671563
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAG
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAG AAATTTGCTGGGTGEST: gi|88581413|gb|CI698397.1|CI698397
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGGTG
EST: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCCAAG AAATTTGCTGGG
genomic: GAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTACAACGGACTCAAAGgcaagttatg ... actatgacagAAATTTGCTGGG
attttcatatgtacataactaatactcttctacccctatgtgtggactatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGCCTAGAGAAGCAGCTTGATTCATCCCTGAAGCACGTCAGAACTACAAGG
aactaat putative branch site (score: 174)
ataactaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttcatttttgtacttcaatatagtaattgaaagtggaagtctaattttcatatgtacataactaatactcttctacccctatgtgtggactatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGCCTAGAGAAGCAGCTTGATTCATCCCTGAAGCACGTCAGAACTACAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - catatgt