1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggtgcttcattccgtctccggccaaggcgacggcgatgtagacgacgatggcaaattcattcgatcggttgggtttttgcagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCGCACAAGGGTGAGATCGGGCTGGTGTTCGAGCACCCGACGCAGCCCGGGA
species | Oryza sativa |
transcript | LOC_Os08g36480.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATG GGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCGEST: gi|58612732|gb|CK040444.1|CK040444
genomic: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATGgtaggtgctt ... gtttttgcagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCG
EST: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATG GGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCGEST: gi|29637325|gb|CB642334.1|CB642334
genomic: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATGgtaggtgctt ... gtttttgcagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCG
EST: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATG GGGATGATGAACAACTGCTGGTTTCAGGG-GAAGGTGAACGTGTGCCGGCCEST: gi|58608515|gb|CK036548.1|CK036548
genomic: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATGgtaggtgctt ... gtttttgcagGGGATGATGAACAACTGCTGGTT-CAAGGTGAAGGTGAACGTGTGCCGGCC
EST: CTGGAATCTCATG GGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCGEST: gi|58663502|gb|CK052188.1|CK052188
genomic: CTGGAATCTCATGgtaggtgctt ... gtttttgcagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCG
EST: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATG GGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCGEST: gi|29645627|gb|CB650634.1|CB650634
genomic: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATGgtaggtgctt ... gtttttgcagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCG
EST: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATG GGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCGEST: gi|66921906|gb|CX108754.1|CX108754
genomic: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATGgtaggtgctt ... gtttttgcagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCG
EST: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATG GGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCGEST: gi|88403692|gb|CI611347.1|CI611347
genomic: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATGgtaggtgctt ... gtttttgcagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCG
EST: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATG GGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCG
genomic: GGGACCAGTCGCACAACACCCAGCCCGAGAAGCTCATCTGGAATCTCATGgtaggtgctt ... gtttttgcagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCG
cgacggcgatgtagacgacgatggcaaattcattcgatcggttgggtttttgcagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCGCACAAGGGTGAGATCGGGCTGGTGTTCGAGCACCCGACGCAGCCCGGGA
tttttgc CT-rich tract
aaattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgcttcattccgtctccggccaaggcgacggcgatgtagacgacgatggcaaattcattcgatcggttgggtttttgcagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCGCACAAGGGTGAGATCGGGCTGGTGTTCGAGCACCCGACGCAGCCCGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC