1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caggactttgcgcttcaacataagctacgaacaattatttgcaatacttaatcctgtaaagtaaaagaaaatgaaaaaaatatatgaaatgatggtgcagAACTGGTACTGCTACGGGAAGGCGGTGGCGGAGCAGGCGGCGTGGGAGGCGGCGCGGCGGCGAGGGGTGGAGCTGGTGGTGGTGAACCCGGTGCTGGTGA
species | Oryza sativa |
transcript | LOC_Os08g34280.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGTCGACGAGTCCTGCTGGAGCGACCTCGACTACTGCAAGGAAACCAGG AACTGGTACTGCTACGGGAAGGCEST: gi|88667030|gb|CI719166.1|CI719166
genomic: TCGTCGACGAGTCCTGCTGGAGCGACCTTGACTACTGCAAGGAAACCAGGgtaggtgcat ... gatggtgcagAACTGGTACTGCTACGGGAAGGC
EST: TCGTCGACGAGTCCTGCTGGAGCGACCTTGACTACTGCAAGGAAACCAGG AACTGGTACTGCTACGGGAAGGCGGTGGCGGAGCAGGCGGCGTGGGAAGCG
genomic: TCGTCGACGAGTCCTGCTGGAGCGACCTTGACTACTGCAAGGAAACCAGGgtaggtgcat ... gatggtgcagAACTGGTACTGCTACGGGAAGGCGGTGGCGGAGCAGGCGGCGTGGGAGGCG
acttaatcctgtaaagtaaaagaaaatgaaaaaaatatatgaaatgatggtgcagAACTGGTACTGCTACGGGAAGGCGGTGGCGGAGCAGGCGGCGTGGGAGGCGGCGCGGCGGCGAGGGGTGGAGCTGGTGGTGGTGAACCCGGTGCTGGTGA
acttaat putative branch site (score: 2)
taaagtaaaagaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggactttgcgcttcaacataagctacgaacaattatttgcaatacttaatcctgtaaagtaaaagaaaatgaaaaaaatatatgaaatgatggtgcagAACTGGTACTGCTACGGGAAGGCGGTGGCGGAGCAGGCGGCGTGGGAGGCGGCGCGGCGGCGAGGGGTGGAGCTGGTGGTGGTGAACCCGGTGCTGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - -caacata
- - - - - - - - - - - - - - gaacaat
- - - - - - - - - - - - - - - - - - atttgca
- - - - - - - - - - - - - - - - - - - - - - - - - -tcctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa