1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagttgttctttgatgtgcatgttgattcgtgttaaaagggagcagcattttattaggggttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAGAGCACAACAGGTTCCTTGAAGCCTTGAAACTGTATGGGAGAGCCTGGC
species | Oryza sativa |
transcript | LOC_Os08g06110.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAEST: gi|58665197|gb|CK053883.1|CK053883
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAEST: gi|58665214|gb|CK053900.1|CK053900
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAEST: gi|29613821|gb|CB618834.1|CB618834
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGGTGGACTGAGGCAEST: gi|29629255|gb|CB634266.1|CB634266
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAAAGGGAGCGTTGGACTGAGGCAEST: gi|29674993|gb|CB671268.1|CB671268
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAEST: gi|29624811|gb|CB629822.1|CB629822
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAEST: gi|33676435|gb|CF304674.1|CF304674
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAEST: gi|33675928|gb|CF304167.1|CF304167
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAAT-GTGAATAAATCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAAAGGGAGCGTTGGACTGAGGCAEST: gi|29676888|gb|CB673163.1|CB673163
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAEST: gi|58663489|gb|CK052175.1|CK052175
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAEST: gi|29622092|gb|CB627103.1|CB627103
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAEST: gi|29630692|gb|CB635701.1|CB635701
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAEST: gi|29613863|gb|CB618876.1|CB618876
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGGTGGACTGAGGCAEST: gi|58653962|gb|CK042642.1|CK042642
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGCAGGCAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGEST: gi|29628510|gb|CB633521.1|CB633521
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTG-AGG-AAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGG
EST: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAG GTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
genomic: TTGAATTGGGAATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGgtgagttgtt ... ttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCA
gtgcatgttgattcgtgttaaaagggagcagcattttattaggggttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAGAGCACAACAGGTTCCTTGAAGCCTTGAAACTGTATGGGAGAGCCTGGC
tgttgat putative branch site (score: 84)
attttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgttctttgatgtgcatgttgattcgtgttaaaagggagcagcattttattaggggttatttgtagGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAGAGCACAACAGGTTCCTTGAAGCCTTGAAACTGTATGGGAGAGCCTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC