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gtaatgattttcttctattgtagctctgattctcacttttctcaagattagtactagttatctaacttggtacttttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACTATCTTTACTAAGAATGACAAGAACCATTTGATCAAGAAGGATGTCCCC
species | Oryza sativa |
transcript | LOC_Os07g14270.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAG CATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACEST: gi|58660986|gb|CK049666.1|CK049666
genomic: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGgtaatgattt ... ttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATAC
EST: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAG CATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACEST: gi|29675378|gb|CB671653.1|CB671653
genomic: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGgtaatgattt ... ttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATAC
EST: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAG CATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACEST: gi|58659500|gb|CK048180.1|CK048180
genomic: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGgtaatgattt ... ttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATAC
EST: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAG CATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACEST: gi|58656433|gb|CK045113.1|CK045113
genomic: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGgtaatgattt ... ttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATAC
EST: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAG CATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACEST: gi|29675242|gb|CB671517.1|CB671517
genomic: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGgtaatgattt ... ttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATAC
EST: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAG CATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACEST: gi|88688874|gb|CI732450.1|CI732450
genomic: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGgtaatgattt ... ttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATAC
EST: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAG CATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACEST: gi|66915891|gb|CX102739.1|CX102739
genomic: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGgtaatgattt ... ttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATAC
EST: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAG CATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACEST: gi|88689333|gb|CI732909.1|CI732909
genomic: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGgtaatgattt ... ttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATAC
EST: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAG CATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACEST: gi|88688533|gb|CI732109.1|CI732109
genomic: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGgtaatgattt ... ttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATAC
EST: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAG CATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATAC
genomic: CTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGgtaatgattt ... ttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATAC
tctcacttttctcaagattagtactagttatctaacttggtacttttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACTATCTTTACTAAGAATGACAAGAACCATTTGATCAAGAAGGATGTCCCC
atctaac putative branch site (score: 2)
tactttt putative PPT
ttatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgattttcttctattgtagctctgattctcacttttctcaagattagtactagttatctaacttggtacttttgaatgcagCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACTATCTTTACTAAGAATGACAAGAACCATTTGATCAAGAAGGATGTCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG