1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tgcattgcatagcaatactcatgattagcgtttaattttattctgaataatgttgtttctaactaacttttgtggcttgtgtttgttgctgtgcaatcagAACCTGTCAGATGAAGCTGTCATTGGAATTAATCCATGGTGCATCTCTGTTGACACTGCCCAGAGATATGAGCATGCATTTTCAAAGAAGCACCAGACAC
species | Oryza sativa |
transcript | LOC_Os06g45360.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATTGATGCGCATGGGAGAAGATCCCCCAGTTGAAGTTTGGATAGCTGAT AACCTGTCAGATGAAGCTGTCATTGGAATTAATCCATGGTGCATCTCTGTTEST: gi|112786400|gb|EE590699.1|EE590699
genomic: AATTGATGCGCATGGGAGAAGATCCCCCAGTTGAAGTTTGGATAGCTGATgtaagtgttg ... gtgcaatcagAACCTGTCAGATGAAGCTGTCATTGGAATTAATCCATGGTGCATCTCTGTT
EST: ATTTGATGCGCATGGGAGAAGATCCCCCAGTTGAAGTTTGGATAGCTGAT AACCTGTCAGATGAAGCTGTCATTGGAATTAATCCATGGTGCATCTCTGTTEST: gi|88982394|gb|CI027913.1|CI027913
genomic: AATTGATGCGCATGGGAGAAGATCCCCCAGTTGAAGTTTGGATAGCTGATgtaagtgttg ... gtgcaatcagAACCTGTCAGATGAAGCTGTCATTGGAATTAATCCATGGTGCATCTCTGTT
EST: AATTGATGCGCATGGGAGAAGATCCCCCAGTTGAAGTTTGGATAGCTGAT AACCTGTCAGATGAAGCTGTCATTGGAATTAATCCATGGTGCATCTCTGTT
genomic: AATTGATGCGCATGGGAGAAGATCCCCCAGTTGAAGTTTGGATAGCTGATgtaagtgttg ... gtgcaatcagAACCTGTCAGATGAAGCTGTCATTGGAATTAATCCATGGTGCATCTCTGTT
aataatgttgtttctaactaacttttgtggcttgtgtttgttgctgtgcaatcagAACCTGTCAGATGAAGCTGTCATTGGAATTAATCCATGGTGCATCTCTGTTGACACTGCCCAGAGATATGAGCATGCATTTTCAAAGAAGCACCAGACAC
aactaac putative branch site (score: 24)
taactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcattgcatagcaatactcatgattagcgtttaattttattctgaataatgttgtttctaactaacttttgtggcttgtgtttgttgctgtgcaatcagAACCTGTCAGATGAAGCTGTCATTGGAATTAATCCATGGTGCATCTCTGTTGACACTGCCCAGAGATATGAGCATGCATTTTCAAAGAAGCACCAGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- cattgca
- - - - - agcaata
- - - - - - - - - tcatgat
- - - - - - - - - - - - - - - - - - - -attctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct