1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttcttttctcatcatttcgggcatgatcctgttagatgcttttgttggtcctcttgaaggagccatgagctgacctactttcccgcttgccacatacagATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGTTTCGTCGGGAATATGAGATGCGCAAAATGAAACAG
species | Oryza sativa |
transcript | LOC_Os05g48020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGCGCCTCAGGATCCCGTACTGGTGGAGCCATTAAGTTTGACACTTCTG ATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGTEST: gi|8858653|gb|AU095971.1|AU095971
genomic: GGGCGCCTCAGGATCCCGTACTGGTGGAGCCATTAAGTTTGACACTTCTGgttagtaagc ... ccacatacagATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGT
EST: TCAGGATCCCCGTACTGGTGGANCCATTAAAGTTTGCCACTTCTG ATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGTEST: gi|218482796|gb|FG967376.1|FG967376
genomic: TCAGGAT-CCCGTACTGGTGGAGCCATT-AAGTTTGACACTTCTGgttagtaagc ... ccacatacagATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGT
EST: GGGCGCCTCAGGATCCCGTACTGGTGGAGCCATTAAGTTTGACACTTCTG ATGGCAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCAAATCAGTEST: gi|27576795|gb|CA999489.1|CA999489
genomic: GGGCGCCTCAGGATCCCGTACTGGTGGAGCCATTAAGTTTGACACTTCTGgttagtaagc ... ccacatacagATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGT
EST: GGGCGCCTCAGGATCCCGTACTGGTGGAGCCATTAAGTTTGACACTTCTG ATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGTEST: gi|218478791|gb|FG960302.1|FG960302
genomic: GGGCGCCTCAGGATCCCGTACTGGTGGAGCCATTAAGTTTGACACTTCTGgttagtaagc ... ccacatacagATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGT
EST: GGGCGCCTCAGGATCCCATACTGTTGGAGCCATTAAGTTTGACACTTCTG ATGGCAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCAAATCAGTEST: gi|218495937|gb|FG948493.1|FG948493
genomic: GGGCGCCTCAGGATCCCGTACTGGTGGAGCCATTAAGTTTGACACTTCTGgttagtaagc ... ccacatacagATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGT
EST: GGGCGCCTCAGGATCCCGTACTGGTGGCGCCATTAAGTTTGACACTTCTG ATGGCAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCAAATCAGT
genomic: GGGCGCCTCAGGATCCCGTACTGGTGGAGCCATTAAGTTTGACACTTCTGgttagtaagc ... ccacatacagATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGT
ttggtcctcttgaaggagccatgagctgacctactttcccgcttgccacatacagATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGTTTCGTCGGGAATATGAGATGCGCAAAATGAAACAG
agctgac putative branch site (score: 73)
ctttcccgcttgcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttttctcatcatttcgggcatgatcctgttagatgcttttgttggtcctcttgaaggagccatgagctgacctactttcccgcttgccacatacagATGGCAACTTTGATGATGAGTACTTTAAGGGAACAGAAGAATCAAATCAGTTTCGTCGGGAATATGAGATGCGCAAAATGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - ggcatga
- - - - - - - - - - - - - - - - - agatgct
- - - - - - - - - - - - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - tcttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgagc