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gtttaaccaatgattcgacatagtagaacatcttgtgatttactgaaaaatcatcctctgtatccagaggaattgatggatttggttaattgttgcagGACCGGAGAGAGATGAGCAGGGGAAACCAA
species | Oryza sativa |
transcript | LOC_Os05g32360.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGCACCACCAGAACGTCATCCAGCTCAAGGAGATCGTCACCTCGCCAG GACCGGAGAGAGATGAGCAGGGGAAACCAAEST: gi|88351784|gb|CI654327.1|CI654327
genomic: GCTGCACCACCAGAACGTCATCCAGCTCAAGGAGATCGTCACCTCGCCAGgtttaaccaa ... attgttgcagGACCGGAGAGAGATGAGCAGGGGAAACCAA
EST: GCTGCACCACCAGAACGTCATCCAGCTCAAGGAGATCGTCACCTCGCCAG GACCGGAGAGAGATGAGCAGGGGAAACCAAEST: gi|300216016|gb|HO088642.1|HO088642
genomic: GCTGCACCACCAGAACGTCATCCAGCTCAAGGAGATCGTCACCTCGCCAGgtttaaccaa ... attgttgcagGACCGGAGAGAGATGAGCAGGGGAAACCAA
EST: GCTGCACCACCAGAACGTCATCCAGCTCAAGGAGATCGTCACCTCGCCAG GACCGGAGAGAGATGAGCAGGGGAAACCAAEST: gi|218484487|gb|FG944130.1|FG944130
genomic: GCTGCACCACCAGAACGTCATCCAGCTCAAGGAGATCGTCACCTCGCCAGgtttaaccaa ... attgttgcagGACCGGAGAGAGATGAGCAGGGGAAACCAA
EST: GCTGCACCACCAGAACGTCATCCAGCTCAAGGAGATCGTCACCTCGCCAG GACCGGAGAGAGATGAGCAGGGGAAACCAA
genomic: GCTGCACCACCAGAACGTCATCCAGCTCAAGGAGATCGTCACCTCGCCAGgtttaaccaa ... attgttgcagGACCGGAGAGAGATGAGCAGGGGAAACCAA
tgaaaaatcatcctctgtatccagaggaattgatggatttggttaattgttgcagGACCGGAGAGAGATGAGCAGGGGAAACCAA
ggttaat putative branch site (score: 16)
ttaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaaccaatgattcgacatagtagaacatcttgtgatttactgaaaaatcatcctctgtatccagaggaattgatggatttggttaattgttgcagGACCGGAGAGAGATGAGCAGGGGAAACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG