1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtctgtagcctgtgtgatattgttcagacatgtccactgccactgcgtgatgcttgagtttctgttggttgggttgctcacatgatcattctcatgacatttgttaagatttcaatgcagCTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCATCTGTAGAGGATCTCGCCGATCAGGTTGCGGATGTGCTCGATTTCTTCGG
species | Oryza sativa |
transcript | LOC_Os05g10740.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAG CTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCATCTGTAGAGGATEST: gi|88393071|gb|CI616555.1|CI616555
genomic: CACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAGgtctgtagcc ... ttcaatgcagCTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCATCTGTAGAGGAT
EST: TGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAG CTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCATCTGTAGAGGATEST: gi|86894823|gb|CI310195.1|CI310195
genomic: TGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAGgtctgtagcc ... ttcaatgcagCTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCATCTGTAGAGGAT
EST: TGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAG CTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCATCTGTAGAGGATEST: gi|88357505|gb|CI623559.1|CI623559
genomic: TGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAGgtctgtagcc ... ttcaatgcagCTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCATCTGTAGAGGAT
EST: TGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAG CTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCATCTGTAGAGGAEST: gi|88330427|gb|CI633638.1|CI633638
genomic: TGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAGgtctgtagcc ... ttcaatgcagCTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCATCTGTAGAGGA
EST: TGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAG CTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCA
genomic: TGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAGgtctgtagcc ... ttcaatgcagCTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCA
tggttgggttgctcacatgatcattctcatgacatttgttaagatttcaatgcagCTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCATCTGTAGAGGATCTCGCCGATCAGGTTGCGGATGTGCTCGATTTCTTCGG
tgctcac putative branch site (score: 11)
atttgttaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtagcctgtgtgatattgttcagacatgtccactgccactgcgtgatgcttgagtttctgttggttgggttgctcacatgatcattctcatgacatttgttaagatttcaatgcagCTAGGAGCGGCTCCAATTCCATCCGATGTGCCGGTGCCATCTGTAGAGGATCTCGCCGATCAGGTTGCGGATGTGCTCGATTTCTTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT