1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttgtgtctcattattagtttaaatgtttttaaccccaacatcatctaacttgcattttgcaccctcctgactgattccagCAAACCTATCGAGCCTGATCGTCTTTTTGATTGCCTTCCAAGTACGCTTCGACCATCATCTGAATCTCATCCTGAAGGTGGAAAAAACCAATCACATTCT
species | Oryza sativa |
transcript | LOC_Os04g58880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAGATGGAAGATGAATTCCAGAAGCAATTGACTCAGCGCAG CAAACCTATCGAGCCTGATCGTCTTTTTGATTGCCTTCCAAGTACGCTTCGEST: gi|33674832|gb|CF303071.1|CF303071
genomic: TGAAGATGGAAGATGAATTCCAGAAGCAATTGACTCAGCGCAGgttgtgtctc ... ctgattccagCAAACCTATCGAGCCTGATCGTCTTTTTGATTGCCTTCCAAGTACGCTTCG
EST: GCCCTTGTGAAGATGGAAGATGAATTCCAGAAGCAATTGACTCAGCGCAG CAAACCTATCGAGCCTGATCGTCTTTTTGATTGCCTTCCAAGTACGCTTCGEST: gi|66922614|gb|CX119142.1|CX119142
genomic: GCCCTTGTGAAGATGGAAGATGAATTCCAGAAGCAATTGACTCAGCGCAGgttgtgtctc ... ctgattccagCAAACCTATCGAGCCTGATCGTCTTTTTGATTGCCTTCCAAGTACGCTTCG
EST: GCCCTTGTGAAGATGGAAGATGAATTCCAGAAGCAATTGACTCAGCGCAG CAAACCTATCGAGCCTGATCGTCTTTTTGATTGCCTTCCAAGTACGCTTCGEST: gi|33676024|gb|CF304263.1|CF304263
genomic: GCCCTTGTGAAGATGGAAGATGAATTCCAGAAGCAATTGACTCAGCGCAGgttgtgtctc ... ctgattccagCAAACCTATCGAGCCTGATCGTCTTTTTGATTGCCTTCCAAGTACGCTTCG
EST: GCCCTTGTGAAGATGGAAGATGAATTCCAGAAGCAATTGACTCAGCGCAG CAAACCTATCGAGCCTGATCGTCTTTTTGATTGCCTTCCAAGTACGCTTCG
genomic: GCCCTTGTGAAGATGGAAGATGAATTCCAGAAGCAATTGACTCAGCGCAGgttgtgtctc ... ctgattccagCAAACCTATCGAGCCTGATCGTCTTTTTGATTGCCTTCCAAGTACGCTTCG
tttttaaccccaacatcatctaacttgcattttgcaccctcctgactgattccagCAAACCTATCGAGCCTGATCGTCTTTTTGATTGCCTTCCAAGTACGCTTCGACCATCATCTGAATCTCATCCTGAAGGTGGAAAAAACCAATCACATTCT
atttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtgtctcattattagtttaaatgtttttaaccccaacatcatctaacttgcattttgcaccctcctgactgattccagCAAACCTATCGAGCCTGATCGTCTTTTTGATTGCCTTCCAAGTACGCTTCGACCATCATCTGAATCTCATCCTGAAGGTGGAAAAAACCAATCACATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA