1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcccatatatagggcctccttactttgcatataaagaaagttcaagcgataagcagtacctgtagtcatggcatgatattctaatccaactctcttgtagGATGGCATAAATGGAGCAGCCATTCCCTCCATAACAGAAATTGCAGAGATTCAACAAACTGTTGTGAAAGGAAATGGTGTCTCAGGAGTAGGGTTGTCTG
species | Oryza sativa |
transcript | LOC_Os04g43420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGACATGTTATTTACAGGACAAGTTGGGCAGGATGTGAAAACAAAA GATGGCATAAATGGAGCAGCCATTCCCTCCATAACAGAAATTGCAGAGATTEST: gi|4716796|gb|AU057912.1|AU057912
genomic: TGCTTGACATGTTATTTACAGGACAAGTTGGGCAGGATGTGAAAACAAAAgtgagtcaat ... tctcttgtagGATGGCATAAATGGAGCAGCCATTCCCTCCATAACAGAAATTGCAGAGATT
EST: TGCTTGACATGTTATTTACAGGACAAGTTGGGCAGGATGTGAAAACAAAA GATGGCATAAATGGAGCAGCCATTCCCTCCATAACAGAAATTGCAGAGATTEST: gi|29656802|gb|CB653077.1|CB653077
genomic: TGCTTGACATGTTATTTACAGGACAAGTTGGGCAGGATGTGAAAACAAAAgtgagtcaat ... tctcttgtagGATGGCATAAATGGAGCAGCCATTCCCTCCATAACAGAAATTGCAGAGATT
EST: TGCTTGACATGTTATTTACAGGACAAGTTGGGCAGGATGTGAAAACAAAA GATGGCATAAATGGAGCAGCCATTCCCTCCATAACAGAAATTGCAGAGATT
genomic: TGCTTGACATGTTATTTACAGGACAAGTTGGGCAGGATGTGAAAACAAAAgtgagtcaat ... tctcttgtagGATGGCATAAATGGAGCAGCCATTCCCTCCATAACAGAAATTGCAGAGATT
gcgataagcagtacctgtagtcatggcatgatattctaatccaactctcttgtagGATGGCATAAATGGAGCAGCCATTCCCTCCATAACAGAAATTGCAGAGATTCAACAAACTGTTGTGAAAGGAAATGGTGTCTCAGGAGTAGGGTTGTCTG
ttctaat putative branch site (score: 25)
ctctcttgt putative PPT
atattctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccatatatagggcctccttactttgcatataaagaaagttcaagcgataagcagtacctgtagtcatggcatgatattctaatccaactctcttgtagGATGGCATAAATGGAGCAGCCATTCCCTCCATAACAGAAATTGCAGAGATTCAACAAACTGTTGTGAAAGGAAATGGTGTCTCAGGAGTAGGGTTGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - -gcctcct
- - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatccaa