1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatatatcgtttgtccgtaggatatgagtcctttggttctctttttcgctaatatgttgttgcaactatgttcggaattatgaactgccaattttttgtttaggggattttttttttcatttaggggatgtggatgaatgcaatataatctcttgatttctgtttgcactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGGCTTCCTCATTGAAAATGGGTACCGATTTGATGAGCTGCGGCCTGGTGT
species | Oryza sativa |
transcript | LOC_Os04g36058.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTCCAGTCAGGGEST: gi|33692401|gb|CF320640.1|CF320640
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
EST: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGEST: gi|86433931|gb|CI094274.1|CI094274
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
EST: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCGGTTGCAGTCAGGGEST: gi|86498636|gb|CI141269.1|CI141269
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
EST: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGEST: gi|88841194|gb|CI080648.1|CI080648
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
EST: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGEST: gi|86430255|gb|CI082678.1|CI082678
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
EST: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGEST: gi|88258665|gb|CI361251.1|CI361251
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
EST: GAAGGTGGTGTTTTTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGEST: gi|86489179|gb|CI131812.1|CI131812
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
EST: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGEST: gi|86882440|gb|CI325827.1|CI325827
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
EST: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGEST: gi|89175233|gb|CI111752.1|CI111752
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
EST: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGEST: gi|88438935|gb|CI531115.1|CI531115
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
EST: AAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGA-GTNGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGEST: gi|88841764|gb|CI081020.1|CI081020
genomic: AAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGT-GATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGG
EST: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGEST: gi|88520185|gb|CI447839.1|CI447839
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
EST: GAAGGTGGTGGTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAG GGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
genomic: GAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGgtaatatatc ... cactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGG
taggggatgtggatgaatgcaatataatctcttgatttctgtttgcactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGGCTTCCTCATTGAAAATGGGTACCGATTTGATGAGCTGCGGCCTGGTGT
tcttgat putative branch site (score: 4)
aatataatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatatcgtttgtccgtaggatatgagtcctttggttctctttttcgctaatatgttgttgcaactatgttcggaattatgaactgccaattttttgtttaggggattttttttttcatttaggggatgtggatgaatgcaatataatctcttgatttctgtttgcactttgcagGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGGCTTCCTCATTGAAAATGGGTACCGATTTGATGAGCTGCGGCCTGGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC