1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacatgtccacttgctttcctttaagctaaagtagttggtgaatcattttattggcgtagtacttacaaggagctactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAATGCAAGACATCCTGATCGGCTTAAAAAAGGAGATGTCTGCTCCTCAGA
species | Oryza sativa |
transcript | LOC_Os03g50440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAACTGGAATG GTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAEST: gi|27545659|gb|CA763865.2|CA763865
genomic: AAACTGGAATGgtacatgtcc ... tactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACA
EST: GATTCCAGACTCGAATCAATACGTCATGTGTGAATCAAGAAACTGGAATG GTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAEST: gi|88242402|gb|CI242251.1|CI242251
genomic: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATGgtacatgtcc ... tactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACA
EST: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATG GTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAEST: gi|88200708|gb|CI200558.1|CI200558
genomic: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATGgtacatgtcc ... tactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACA
EST: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATG GTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAEST: gi|86845255|gb|CI340364.1|CI340364
genomic: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATGgtacatgtcc ... tactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACA
EST: AATATGTCATGTGTGAATCAAGAAACTGGAATG GTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAEST: gi|88415272|gb|CI586478.1|CI586478
genomic: AATATGTCATGTGTGAATCAAGAAACTGGAATGgtacatgtcc ... tactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACA
EST: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATG GTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAEST: gi|58592031|gb|CF990339.1|CF990339
genomic: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATGgtacatgtcc ... tactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACA
EST: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATG GTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAEST: gi|89194551|gb|CI116988.1|CI116988
genomic: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATGgtacatgtcc ... tactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACA
EST: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATG GTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAEST: gi|58691622|gb|CK080309.1|CK080309
genomic: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATGgtacatgtcc ... tactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACA
EST: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATG GTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACA
genomic: GATTCCAGACTCGAATCAATATGTCATGTGTGAATCAAGAAACTGGAATGgtacatgtcc ... tactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACA
aagtagttggtgaatcattttattggcgtagtacttacaaggagctactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAATGCAAGACATCCTGATCGGCTTAAAAAAGGAGATGTCTGCTCCTCAGA
tacttac putative branch site (score: 44)
ctactttct putative PPT
tgaatcattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgtccacttgctttcctttaagctaaagtagttggtgaatcattttattggcgtagtacttacaaggagctactttctagGTTGAACCAAGTCTATTCCCCATGCTTGGTAACTGGCAAAGAGAACATACAATGCAAGACATCCTGATCGGCTTAAAAAAGGAGATGTCTGCTCCTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC