1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tccaatcccactatggaatgttgaatttactaacttcggaatatgttgaagtaaattagtatggggtaagttacctagatgttttaattacaatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT
species | Oryza sativa |
transcript | LOC_Os03g36750.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAG GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACEST: gi|58609297|gb|CK037330.1|CK037330
genomic: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGgtcatatatt ... caatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTAC
EST: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAG GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGEST: gi|29625469|gb|CB630480.1|CB630480
genomic: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGgtcatatatt ... caatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAG
EST: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAG GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACEST: gi|38473540|gb|CF957672.1|CF957672
genomic: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGgtcatatatt ... caatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTAC
EST: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAG GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACEST: gi|33797557|gb|CF324638.1|CF324638
genomic: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGgtcatatatt ... caatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTAC
EST: AGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAG GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACEST: gi|117242305|gb|CT842941.1|CT842941
genomic: AGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGgtcatatatt ... caatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTAC
EST: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAG GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACEST: gi|58589895|gb|CF988203.1|CF988203
genomic: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGgtcatatatt ... caatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTAC
EST: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAG GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGGGGTATGCAGTACEST: gi|29657434|gb|CB653709.1|CB653709
genomic: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGgtcatatatt ... caatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTAC
EST: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAG GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACEST: gi|29657435|gb|CB653710.1|CB653710
genomic: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGgtcatatatt ... caatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTAC
EST: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAG GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACEST: gi|58586453|gb|CF984761.1|CF984761
genomic: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGgtcatatatt ... caatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTAC
EST: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAG GTTAATAGATGAAGCGCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTAC
genomic: ATGGCTCTGATTGAGAAGAAGTTGCTTCCCCTCCGTCCAGGTGTTCAAAGgtcatatatt ... caatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTAC
ttgaagtaaattagtatggggtaagttacctagatgttttaattacaatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT
ttttaat putative branch site (score: 40)
tagatgttttaattac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaatcccactatggaatgttgaatttactaacttcggaatatgttgaagtaaattagtatggggtaagttacctagatgttttaattacaatttacagGTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - tgttgaa