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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattttttattttctaagatgttgctcacagatttataaatgatcccttaatccctcaatcttttgtttgtagCACATTGCAAAGCAGCGCCTCCCTAACCTGTCAAGTGACCTGATGAAAAAGGGAAAACATTTCATATTGATACGCAACCCTCTAAATATCCTG

Basic information

species Oryza sativa
transcript LOC_Os03g24460.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24460.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G108416_T01 (Zea mays), 3'ss of exon 3
----------gtagattttttat-----tttctaagatgttgctcacagatttataaatgatcccttaatccctcaatcttttgtttgtagCACATTGCAAAGCAGCGCCTCCCTAACCTGTCAAGTGACCTGATGAAAAAGGGAAAACATTTCATATTGATACGCAACCCTCTAAATATCCTG
            | | || ||       ||| | | ||| |        ||||||| |||||  | |    |||   | || | |   ||||||||  ||||||| |  ||||| || |||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||| |||| |||
gtattatttcagaaacttattgcacagctttgtgaaatgataagt-tttatttatatatgataacct----cctttcttttctttgaatagCACATCTCAAAGCAACATCTCCCAAATCTGTCAAGCGACCTCATGAAGAAGGGAAAACATTTCATATTGATACGGAACCCTCTAGATATACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29621729|gb|CB626740.1|CB626740
EST:     TCAGTGAAGTCATTTTTGGGCCAGGGAAGAGAAAATATCGTTACTGCAAG                         CACATTGCAAAGCAGCGCCTCCCTAACCTGTCAAGTGACCTGATGAAAAAG
genomic: TCAGTGAAGTCATTTTTGGGCCAGGGAAGAGAAAATATCGTTACTGCAAGgtagattttt ... ttgtttgtagCACATTGCAAAGCAGCGCCTCCCTAACCTGTCAAGTGACCTGATGAAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttgctcacagatttataaatgatcccttaatccctcaatcttttgtttgtagCACATTGCAAAGCAGCGCCTCCCTAACCTGTCAAGTGACCTGATGAAAAAGGGAAAACATTTCATATTGATACGCAACCCTCTAAATATCCTG
                                 tccctcaatctttt  CT-rich tract
           agatttataaatgat  TA-rich tract