1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtagaactcaacaatgttgcattgttgccttgtgtgactgcttggcagatttttagctgagaaagtgcgggcctttgatcatgtgttcttttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG
species | Oryza sativa |
transcript | LOC_Os03g16980.5 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCGTGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58659240|gb|CK047920.1|CK047920
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|30229035|gb|CB966926.1|CB966926
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|428184|gb|D24332.1|D24332
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: GACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAG-NAACNTTTTTCACTGGTTCAAAAGACAACCTGAAGAAEST: gi|30228342|gb|CB966233.1|CB966233
genomic: GACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAAC-TTTTTCACTGGTTCAAAAGACAACCTGAAGAA
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|313080404|gb|HO213412.1|HO213412
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAATCTGAAGAAGEST: gi|33380802|gb|CF196145.1|CF196145
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: AACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58656016|gb|CK044696.1|CK044696
genomic: AACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCGCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58672962|gb|CK061648.1|CK061648
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|58659773|gb|CK048453.1|CK048453
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatga ... ttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
cagatttttagctgagaaagtgcgggcctttgatcatgtgttcttttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG
ctttgat putative branch site (score: 5)
tgttcttttctgttc putative PPT
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaactcaacaatgttgcattgttgccttgtgtgactgcttggcagatttttagctgagaaagtgcgggcctttgatcatgtgttcttttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA