1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atctttggacaatgattgatctgttgaatacatccacaaatagttttcagatttgcagaacctgtttttccgttttctgatggttatgaaaaaaattcagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACCTGGCTGATGCTATGACCAGGGCAAAGGTACTTGACATTGATCTGCAGA
species | Oryza sativa |
transcript | LOC_Os03g09250.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATG GTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACEST: gi|58598823|gb|CK009351.1|CK009351
genomic: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATGgtaatctgtc ... aaaaattcagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATG GTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACEST: gi|58664958|gb|CK053644.1|CK053644
genomic: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATGgtaatctgtc ... aaaaattcagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATG GTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACEST: gi|58609519|gb|CK037552.1|CK037552
genomic: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATGgtaatctgtc ... aaaaattcagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATG GTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACEST: gi|13420717|gb|AU174807.1|AU174807
genomic: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATGgtaatctgtc ... aaaaattcagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATG GTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACEST: gi|58606593|gb|CK034626.1|CK034626
genomic: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATGgtaatctgtc ... aaaaattcagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATG GTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACEST: gi|58686865|gb|CK075552.1|CK075552
genomic: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATGgtaatctgtc ... aaaaattcagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATG GTGAACCCTGATGAEST: gi|58602603|gb|CK013131.1|CK013131
genomic: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATGgtaatctgtc ... aaaaattcagGTGAACCCTGATGA
EST: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGGCCATG GTGAACCCTGAEST: gi|29616445|gb|CB621457.1|CB621457
genomic: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATGgtaatctgtc ... aaaaattcagGTGAACCCTGA
EST: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATG GTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAAC
genomic: GCTACAACGGGGAGGAGATCTACGCGCCCTTCAAGAGCCTCCTGCCCATGgtaatctgtc ... aaaaattcagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAAC
ttcagatttgcagaacctgtttttccgttttctgatggttatgaaaaaaattcagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACCTGGCTGATGCTATGACCAGGGCAAAGGTACTTGACATTGATCTGCAGA
ttctgat putative branch site (score: 3)
ttatgaaaaaaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctttggacaatgattgatctgttgaatacatccacaaatagttttcagatttgcagaacctgtttttccgttttctgatggttatgaaaaaaattcagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACCTGGCTGATGCTATGACCAGGGCAAAGGTACTTGACATTGATCTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG